Alligator_sinensis_CCG011335.1 (Alligator sinensis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Alligator_sinensis_CCG011335.1 T244512_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF2
M05545_2.00 		Homo sapiens
NGAAAVYGAAAS
STTTCRBTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX 		0.839 0.839
IRF2
M02691_2.00 		Homo sapiens
SGAAAGYGAAASYNWWHH
DDWWNRSTTTCRCTTTCS		 SELEX
Mathelier et al.(2014)
MA0051.1 		0.839 0.839
IRF2
M09237_2.00 		Homo sapiens
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A 		0.839 0.839
IRF2
M09596_2.00 		Homo sapiens
NRAAVNRRAASB
VSTTYYNBTTYN		 Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985 		0.839 0.839
IRF2
M10892_2.00 		Homo sapiens
GAAAAGYGAAASY
RSTTTCRCTTTTC		 Transfac
Matys et al.(2006)
V$IRF2_01 		0.839 0.839
IRF2
M10893_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF2_Q6 		0.839 0.839
IRF2
M05546_2.00 		Homo sapiens
NGAAASYGAAAS
STTTCRSTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX 		0.839 0.839
Irf2
M00805_2.00 		Mus musculus
NDWNHGAAAV
BTTTCDNWHN		 PBM
Weirauch et al.(2013)
pTH2835 		0.804 0.804
Irf2
M09245_2.00 		Mus musculus
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B 		0.804 0.804
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG011335.1 IRF 9 64

Links

Other IRF family TFs
Other Alligator sinensis TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGOS_AER385C Ashbya gossypii AGOS_AER385C I
CaO19.1187 Candida albicans CaO19.1187 I
CaO19.8778 Candida albicans CaO19.8778 I
CD36_60230 Candida dubliniensis CD36_60230 I
PGUG_02866 Candida guilliermondii PGUG_02866 I
CLUG_00757 Candida lusitaniae CLUG_00757 N
G210_3997 Candida maltosa G210_3997 I
CORT_0F04410 Candida orthopsilosis CORT_0F04410 N
CPAG_03745 Candida parapsilosis CPAG_03745 N
CANTEDRAFT_107875 Candida tenuis CANTEDRAFT_107875 I
CLUG_00757 Clavispora lusitaniae CLUG_00757 N
DOTSEDRAFT_68813 Dothistroma septosporum DOTSEDRAFT_68813 I
FFUJ_05561 Fusarium fujikuroi FFUJ_05561 I
FGRRES_02814 Fusarium graminearum FGRRES_02814 I
FOXG_15666 Fusarium oxysporum FOXG_15666 I
FPSE_05577 Fusarium pseudograminearum FPSE_05577 I
NechaG67823 Fusarium solani NechaG67823 I
FVEG_13127 Fusarium verticillioides FVEG_13127 I
CMQ_1792 Grosmannia clavigera CMQ_1792 I
PAS_chr3_0712 Komagataella pastoris PAS_chr3_0712 I
KUCA_T00002265001 Kuraishia capsulata KUCA_T00002265001 I
KUCA_T00002787001 Kuraishia capsulata KUCA_T00002787001 I
LELG_04654 Lodderomyces elongisporus LELG_04654 N
MGG_10575 Magnaporthe oryzae MGG_10575 I
PGUG_02866 Meyerozyma guilliermondii PGUG_02866 I
GNLVRS01_PISO0C07856g Millerozyma farinosa GNLVRS01_PISO0C07856g N
GNLVRS01_PISO0D07923g Millerozyma farinosa GNLVRS01_PISO0D07923g N
estExt_Genewise1Plus.C_sca_54_chr3_4_00128 Nectria haematococca estExt_Genewise1Plus.C_sca_54_chr3_4_00128 I
sah-2 Neurospora crassa NCU04731 D
estExt_fgenesh3_pm.C_60084 Neurospora discreta estExt_fgenesh3_pm.C_60084 I
NEUTE1DRAFT_131690 Neurospora tetrasperma NEUTE1DRAFT_131690 I
XP_002492941.1 Pichia pastoris XP_002492941.1 I
estExt_genewise1_human.C_chr_5.10129 Pichia stipitis estExt_genewise1_human.C_chr_5.10129 I
PODANS_1_21400 Podospora anserina PODANS_1_21400 I
AACERI_AaceriAER385C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAER385C I
PICST_72282 Scheffersomyces stipitis PICST_72282 I
SMAC_03831 Sordaria macrospora SMAC_03831 I
UCRPA7_6279 Togninia minima UCRPA7_6279 I
BN7_3544 Wickerhamomyces ciferrii BN7_3544 I
YALI0_D15334g Yarrowia lipolytica YALI0_D15334g I
ZYRO0G15972g Zygosaccharomyces rouxii ZYRO0G15972g I