LBD6 (Oryza indica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 BGIOSGA004955 T244924_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.848 0.848
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA004955-PA LOB 38 136

Links

Other LOB family TFs
Other Oryza indica TFs

247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI007962 Acyrthosiphon pisum ACYPI007962 N 0.000
AAEL003602 Aedes aegypti AAEL003602 N 0.000
PRDM8 Anolis carolinensis ENSACAG00000010106 N 0.000
AALB005765 Anopheles albimanus AALB005765 N 0.000
AARA007771 Anopheles arabiensis AARA007771 N 0.000
AATE006171 Anopheles atroparvus AATE006171 N 0.000
ACHR001790 Anopheles christyi ACHR001790 N 0.000
ACUA006984 Anopheles culicifacies ACUA006984 N 0.000
ADIR008055 Anopheles dirus ADIR008055 N 0.000
AEPI001699 Anopheles epiroticus AEPI001699 N 0.000
AFAF012484 Anopheles farauti AFAF012484 N 0.000
AFUN008026 Anopheles funestus AFUN008026 N 0.000
AGAP007109 Anopheles gambiae AGAP007109 N 0.000
AMAM024265 Anopheles maculatus AMAM024265 N 0.000
AMEC009079 Anopheles melas AMEC009079 N 0.000
AMEC019433 Anopheles melas AMEC019433 N 0.000
AMEM014597 Anopheles merus AMEM014597 N 0.000
AMIN011248 Anopheles minimus AMIN011248 N 0.000
AQUA002036 Anopheles quadriannulatus AQUA002036 N 0.000
ASIS021384 Anopheles sinensis ASIS021384 N 0.000
ASTEI06883 Anopheles stephensi ASTEI06883 N 0.000
GB51047 Apis mellifera GB51047 N 0.000
ENSAMXG00000020060 Astyanax mexicanus ENSAMXG00000020060 N 0.000
ACEP12467 Atta cephalotes ACEP12467 N 0.000
BGIBMGA012741 Bombyx mori BGIBMGA012741 N 0.000
PRDM8 Callithrix jacchus ENSCJAG00000015064 N 0.000
Cflo_02233--XP_001120809.1_APIME Camponotus floridanus Cflo_02233--XP_001120809.1_APIME N 0.000
PRDM8 Canis familiaris ENSCAFG00000008881 N 0.000
CapteG221467 Capitella teleta CapteG221467 N 0.000
PRDM8 Cavia porcellus ENSCPOG00000019738 N 0.000
ENSCSAG00000004478 Chlorocebus sabaeus ENSCSAG00000004478 N 0.000
CLEC010738 Cimex lectularius CLEC010738 N 0.000
CpipJ_CPIJ004963 Culex pipiens CpipJ_CPIJ004963 N 0.000
CPIJ004963 Culex quinquefasciatus CPIJ004963 N 0.000
KGM_11907 Danaus plexippus KGM_11907 N 0.000
prdm8b Danio rerio ENSDARG00000054683 N 0.000
DAPPUDRAFT_28712 Daphnia pulex DAPPUDRAFT_28712 N 0.000
PRDM8 Dasypus novemcinctus ENSDNOG00000011667 N 0.000
GF23998 Drosophila ananassae FBgn0100992 N 0.000
GG15296 Drosophila erecta FBgn0107548 N 0.000
GH14523 Drosophila grimshawi FBgn0121999 N 0.000
GH25273 Drosophila grimshawi FBgn0132728 N 0.000
CG13287 Drosophila melanogaster FBgn0035643 N 0.000
GI13299 Drosophila mojavensis FBgn0136056 N 0.000
GL21034 Drosophila persimilis FBgn0158629 N 0.000
GA12173 Drosophila pseudoobscura FBgn0072221 N 0.000
GM14727 Drosophila sechellia FBgn0169648 N 0.000
GD13907 Drosophila simulans FBgn0185603 N 0.000
GJ12068 Drosophila virilis FBgn0199320 N 0.000
GK16660 Drosophila willistoni FBgn0218662 N 0.000
GE21517 Drosophila yakuba FBgn0238774 N 0.000
ENSECAG00000017767 Equus caballus ENSECAG00000017767 N 0.000
ENSFCAG00000026794 Felis catus ENSFCAG00000026794 N 0.000
ENSGALG00000026560 Gallus gallus ENSGALG00000026560 N 0.000
PRDM8 Gorilla gorilla ENSGGOG00000007501 N 0.000
HHAL003310-PA Halyomorpha halys HHAL003310-PA N 0.000
Hsal_04139--XP_001120809.1_APIME Harpegnathos saltator Hsal_04139--XP_001120809.1_APIME N 0.000
HMEL017852 Heliconius melpomene HMEL017852 N 0.000
PRDM8 Homo sapiens ENSG00000152784 N 0.000
ENSSTOG00000015688 Ictidomys tridecemlineatus ENSSTOG00000015688 N 0.000
ISCW009928 Ixodes scapularis ISCW009928 N 0.000
ENSLACG00000001866 Latimeria chalumnae ENSLACG00000001866 N 0.000
ENSLOCG00000007226 Lepisosteus oculatus ENSLOCG00000007226 N 0.000
LDEC001191 Leptinotarsa decemlineata LDEC001191 N 0.000
LotgiG69958 Lottia gigantea LotgiG69958 N 0.000
LCUP008185 Lucilia cuprina LCUP008185 N 0.000
ENSP00000406998 Macaca fascicularis ENSP00000406998 N 0.000
PRDM8 Macaca mulatta ENSMMUG00000003338 N 0.000
ENSMEUG00000015872 Macropus eugenii ENSMEUG00000015872 N 0.000
MCINX010301 Melitaea cinxia MCINX010301 N 0.000
PRDM8 Monodelphis domestica ENSMODG00000020789 N 0.000
MDOA007546 Musca domestica MDOA007546 N 0.000
ENSMPUG00000006558 Mustela putorius furo ENSMPUG00000006558 N 0.000
Prdm8 Mus musculus ENSMUSG00000035456 N 0.000
PRDM8 Myotis lucifugus ENSMLUG00000030190 N 0.000
NV17890 Nasonia vitripennis NV17890 N 0.000
ENSNLEG00000008504 Nomascus leucogenys ENSNLEG00000008504 N 0.000
Ocbimv22006527m.g Octopus bimaculoides Ocbimv22006527m.g N 0.000
Ogr08710 Ophisaurus gracilis Ogr08710 N 0.000
ENSONIG00000014038 Oreochromis niloticus ENSONIG00000014038 N 0.000
prdm8b Oryzias latipes ENSORLG00000017786 N 0.000
ENSOGAG00000026262 Otolemur garnettii ENSOGAG00000026262 N 0.000
ENSOARG00000018972 Ovis aries ENSOARG00000018972 N 0.000
ENSPANG00000024349 Papio anubis ENSPANG00000024349 N 0.000
PHUM271650 Pediculus humanus PHUM271650 N 0.000
ENSPMAG00000005756 Petromyzon marinus ENSPMAG00000005756 N 0.000
ENSPFOG00000011716 Poecilia formosa ENSPFOG00000011716 N 0.000
Pvit_15291 Pogona vitticeps Pvit_15291 N 0.000
ENSPPYG00000014879 Pongo abelii ENSPPYG00000014879 N 0.000
PRDM8 Procavia capensis ENSPCAG00000001081 N 0.000
Prdm8 Rattus norvegicus ENSRNOG00000002004 N 0.000
ENSSHAG00000018147 Sarcophilus harrisii ENSSHAG00000018147 N 0.000
SINV25005 Solenopsis invicta SINV25005 N 0.000
PRDM8 Sorex araneus ENSSARG00000009823 N 0.000
SMAR006435 Strigamia maritima SMAR006435 N 0.000
prdm8b Takifugu rubripes ENSTRUG00000001003 N 0.000
tetur11g03890 Tetranychus urticae tetur11g03890 N 0.000
prdm8b Tetraodon nigroviridis ENSTNIG00000016712 N 0.000
TC013073 Tribolium castaneum TC013073 N 0.000
PRDM8 Tupaia belangeri ENSTBEG00000006138 N 0.000
prdm8 Xenopus tropicalis XB-GENE-984391 N 0.000
ENSXMAG00000009993 Xiphophorus maculatus ENSXMAG00000009993 N 0.000
L798_05037 Zootermopsis nevadensis L798_05037 N 0.000