Bra032938 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra032938 T245078_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.814 0.814
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.814 0.814
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra032938.1-P LOB 180 276

Links

Other LOB family TFs
Other Brassica rapa TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g00051 Acanthocheilonema viteae nAv.1.0.1.g00051 N 0.000
ANCCAN_23625 Ancylostoma caninum ANCCAN_23625 N 0.000
ACAC_0000743301 Angiostrongylus cantonensis ACAC_0000743301 N 0.000
ACOC_0000703401 Angiostrongylus costaricensis ACOC_0000703401 N 0.000
ASIM_0001696801 Anisakis simplex ASIM_0001696801 N 0.000
ASU_00242 Ascaris suum ASU_00242 I 0.000
Bm5024 Brugia malayi Bm5024 I 0.000
CBN10125 Caenorhabditis brenneri CBN10125 I 0.000
CBG22984 Caenorhabditis briggsae CBG22984 I 0.000
pros-1 Caenorhabditis elegans WBGene00000448 D 0.000
CJA12444 Caenorhabditis japonica CJA12444 I 0.000
DICVIV_00922 Dictyocaulus viviparus DICVIV_00922 N 0.000
DME_0000841401 Dracunculus medinensis DME_0000841401 I 0.000
EVEC_0001110501 Enterobius vermicularis EVEC_0001110501 I 0.000
HCOI01824000 Haemonchus contortus HCOI01824000 I 0.000
HCOI00799800 Haemonchus contortus HCOI00799800 I 0.000
HPLM_0001215301 Haemonchus placei HPLM_0001215301 I 0.000
nLs.2.1.2.g05094 Litomosoides sigmodontis nLs.2.1.2.g05094 N 0.000
LOAG_13494 Loa loa LOAG_13494 N 0.000
NECAME_07739 Necator americanus NECAME_07739 I 0.000
NBR_0000066801 Nippostrongylus brasiliensis NBR_0000066801 I 0.000
OFLC_0001531301 Onchocerca flexuosa OFLC_0001531301 N 0.000
nOo.2.0.1.g09824 Onchocerca ochengi nOo.2.0.1.g09824 N 0.000
WBGene00244521 Onchocerca volvulus WBGene00244521 I 0.000
PEQ_0001309401 Parascaris equorum PEQ_0001309401 N 0.000
PTRK_0001568700 Parastrongyloides trichosuri PTRK_0001568700 I 0.000
RSKR_0000081800 Rhabditophanes kr3021 RSKR_0000081800 N 0.000
L596_g9976 Steinernema carpocapsae L596_g9976 I 0.000
L889_g22574 Steinernema feltiae L889_g22574 I 0.000
L893_g28279 Steinernema glaseri L893_g28279 I 0.000
L898_g8569 Steinernema monticolum L898_g8569 I 0.000
L892_g25141 Steinernema scapterisci L892_g25141 I 0.000
SPAL_0001624500 Strongyloides papillosus SPAL_0001624500 I 0.000
SSTP_0000359900 Strongyloides stercoralis SSTP_0000359900 I 0.000
SVE_0442300 Strongyloides venezuelensis SVE_0442300 I 0.000
WUBG_10304 Wuchereria bancrofti WUBG_10304 N 0.000