AS2 (Arabidopsis lyrata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 fgenesh2_kg.2__796__AT1G65620.2 T245156_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		1.000 1.000
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__796__AT1G65620.2 LOB 9 107

Links

Other LOB family TFs
Other Arabidopsis lyrata TFs

291 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_021_00051 Aquilegia coerulea Aquca_021_00051 I 0.000
ANAC041 Arabidopsis lyrata fgenesh2_kg.4__1354__AT2G33480.1 I 0.000
ANAC083 Arabidopsis lyrata scaffold_601328.1 I 0.000
NAC083 Arabidopsis thaliana AT5G13180 D 0.000
NAC041 Arabidopsis thaliana AT2G33480 I 0.000
Bostr.23794s0753 Boechera stricta Bostr.23794s0753 I 0.000
Bo2g011120 Brassica oleracea Bo2g011120 I 0.000
Bo3g009040 Brassica oleracea Bo3g009040 I 0.000
Bo4g043670 Brassica oleracea Bo4g043670 I 0.000
Bo4g181990 Brassica oleracea Bo4g181990 I 0.000
Bo9g168950 Brassica oleracea Bo9g168950 I 0.000
Bra005492 Brassica rapa Bra005492 I 0.000
Bra006186 Brassica rapa Bra006186 I 0.000
Bra008849 Brassica rapa Bra008849 I 0.000
Bra023395 Brassica rapa Bra023395 I 0.000
PK12461.1 Cannabis sativa PK12461.1 I 0.000
Cagra.0301s0034 Capsella grandiflora Cagra.0301s0034 N 0.000
Carubv10023833m.g Capsella rubella Carubv10023833m.g N 0.000
evm.TU.supercontig_4.138 Carica papaya evm.TU.supercontig_4.138 N 0.000
Cla001517 Citrullus lanatus Cla001517 I 0.000
Cla011059 Citrullus lanatus Cla011059 I 0.000
Ciclev10032547m.g Citrus clementina Ciclev10032547m.g I 0.000
orange1.1g030727m.g Citrus sinensis orange1.1g030727m.g I 0.000
Cucsa.349370 Cucumis sativus Cucsa.349370 I 0.000
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I 0.000
Thhalv10017152m.g Eutrema salsugineum Thhalv10017152m.g I 0.000
Thhalv10014495m.g Eutrema salsugineum Thhalv10014495m.g I 0.000
GLYMA08G47520 Glycine max GLYMA08G47520 I 0.000
GLYMA18G53954 Glycine max GLYMA18G53954 I 0.000
Gorai.012G125500 Gossypium raimondii Gorai.012G125500 I 0.000
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I 0.000
MDP0000130123 Malus domestica MDP0000130123 I 0.000
MDP0000126517 Malus domestica MDP0000126517 I 0.000
cassava12891.valid.m1 Manihot esculenta cassava12891.valid.m1 I 0.000
cassava1138.valid.m1 Manihot esculenta cassava1138.valid.m1 I 0.000
GSMUA_Achr10G11910_001 Musa acuminata GSMUA_Achr10G11910_001 N 0.000
POPTR_0001s13380 Populus trichocarpa POPTR_0001s13380 I 0.000
POPTR_0003s16490 Populus trichocarpa POPTR_0003s16490 I 0.000
Pm007070 Prunus mume Pm007070 I 0.000
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I 0.000
30128.m009035 Ricinus communis 30128.m009035 I 0.000
30147.m014441 Ricinus communis 30147.m014441 N 0.000
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I 0.000
SapurV1A.0453s0210 Salix purpurea SapurV1A.0453s0210 I 0.000
SapurV1A.0614s0190 Salix purpurea SapurV1A.0614s0190 N 0.000
SapurV1A.1580s0010 Salix purpurea SapurV1A.1580s0010 N 0.000
TCM_008477 Theobroma cacao TCM_008477 I 0.000
ANAC083 Vitis vinifera VIT_01s0146g00280 I 0.000