Cucsa.257700 (Cucumis sativus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cucsa.257700 T246521_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.798 0.798
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.798 0.798
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.758 0.758
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.257700.1 LOB 24 123

Links

Other LOB family TFs
Other Cucumis sativus TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04528 Aegilops tauschii F775_04528 I 0.727
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.778
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.717
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.808
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.768
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.707
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.798
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.758
LBD18 Arabidopsis thaliana AT2G45420 D 0.798
LBD30 Arabidopsis thaliana AT4G00220 D 0.758
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.758
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.798
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.788
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.747
Bo2g097560 Brassica oleracea Bo2g097560 I 0.747
Bo4g024620 Brassica oleracea Bo4g024620 I 0.798
Bo4g195520 Brassica oleracea Bo4g195520 I 0.778
Bo9g002160 Brassica oleracea Bo9g002160 I 0.747
Bra004910 Brassica rapa Bra004910 I 0.788
Bra008514 Brassica rapa Bra008514 I 0.747
Bra037323 Brassica rapa Bra037323 I 0.747
Bra040311 Brassica rapa Bra040311 I 0.788
PK21617.1 Cannabis sativa PK21617.1 I 0.739
PK23185.1 Cannabis sativa PK23185.1 I 0.707
PK25573.1 Cannabis sativa PK25573.1 I 0.727
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.798
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.768
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.768
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.798
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.717
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.737
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.717
Ca_12213 Cicer arietinum Ca_12213 I 0.717
Ca_19598 Cicer arietinum Ca_19598 I 0.717
Ca_20428 Cicer arietinum Ca_20428 I 0.747
Cla007068 Citrullus lanatus Cla007068 I 0.818
Cla007069 Citrullus lanatus Cla007069 I 0.727
Cla021625 Citrullus lanatus Cla021625 I 0.960
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.828
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.828
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.818
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.818
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.717
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.798
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.737
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.707
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.778
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.747
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.727
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.808
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.808
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.717
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.727
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.788
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.717
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.707
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.768
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.727
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.707
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.818
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.727
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.707
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.818
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.798
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.788
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.717
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.768
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.798
MDP0000131964 Malus domestica MDP0000131964 I 0.717
MDP0000254224 Malus domestica MDP0000254224 I 0.747
MDP0000429067 Malus domestica MDP0000429067 I 0.747
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.828
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.727
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.828
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.717
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.727
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.707
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.727
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.778
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.737
mgf020735m Mimulus guttatus mgf020735m I 0.737
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.838
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.788
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.818
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.798
OBART03G10450 Oryza barthii OBART03G10450 I 0.788
OB03G20590 Oryza brachyantha OB03G20590 I 0.717
OB10G12360 Oryza brachyantha OB10G12360 I 0.768
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.788
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.747
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.788
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.747
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.788
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.747
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.789
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.788
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.747
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.788
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.747
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.788
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.747
OS03G0246900 Oryza sativa OS03G0246900 I 0.788
OS10G0162600 Oryza sativa OS10G0162600 I 0.747
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.758
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.737
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.768
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.798
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.716
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.724
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.702
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.737
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.717
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.747
Pm017935 Prunus mume Pm017935 I 0.758
Pm017936 Prunus mume Pm017936 I 0.818
Pm020629 Prunus mume Pm020629 I 0.707
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.818
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.768
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.707
30174.m008897 Ricinus communis 30174.m008897 I 0.727
30174.m008898 Ricinus communis 30174.m008898 I 0.828
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.768
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.717
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.818
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.717
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.701
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.701
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.808
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.777
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.717
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.798
TCM_004106 Theobroma cacao TCM_004106 I 0.717
TCM_005496 Theobroma cacao TCM_005496 I 0.826
TCM_005497 Theobroma cacao TCM_005497 I 0.727
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.798
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.788
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.798
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.737
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.707
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.798
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.758
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.798
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.798