Carubv10020974m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10020974m.g T246777_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		1.000 1.000
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020974m LOB 9 107

Links

Other LOB family TFs
Other Capsella rubella TFs

291 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32919 Aegilops tauschii F775_32919 N 0.000
MLOC_5374 Hordeum vulgare MLOC_5374 N 0.000
MLOC_57427 Hordeum vulgare MLOC_57427 N 0.000
Traes_7BS_CF3224FD0 Triticum aestivum Traes_7BS_CF3224FD0 N 0.000
Traes_7DS_6418D89A3 Triticum aestivum Traes_7DS_6418D89A3 N 0.000
TRIUR3_01582 Triticum urartu TRIUR3_01582 N 0.000