evm.TU.supercontig_1.335 (Carica papaya)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 evm.TU.supercontig_1.335 T246873_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.727 0.727
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_1.335 LOB 5 103

Links

Other LOB family TFs
Other Carica papaya TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ADIR005096 Anopheles dirus ADIR005096 I 0.000
AEPI009051 Anopheles epiroticus AEPI009051 I 0.000
AFUN000829 Anopheles funestus AFUN000829 I 0.000
AGAP009749 Anopheles gambiae AGAP009749 I 0.000
AMEC017008 Anopheles melas AMEC017008 I 0.000
AQUA011339 Anopheles quadriannulatus AQUA011339 I 0.000
GB44259 Apis mellifera GB44259 N 0.000
ACEP18972 Atta cephalotes ACEP18972 I 0.000
Cflo_03170--XP_394708.3_APIME Camponotus floridanus Cflo_03170--XP_394708.3_APIME I 0.000
CapteG180266 Capitella teleta CapteG180266 N 0.000
CpipJ_CPIJ014773 Culex pipiens CpipJ_CPIJ014773 I 0.000
CPIJ014773 Culex quinquefasciatus CPIJ014773 I 0.000
DAPPUDRAFT_309730 Daphnia pulex DAPPUDRAFT_309730 I 0.000
YQE_09240 Dendroctonus ponderosae YQE_09240 I 0.000
EmuJ_000805200 Echinococcus multilocularis EmuJ_000805200 N 0.000
Hsal_13684--XP_394708.3_APIME Harpegnathos saltator Hsal_13684--XP_394708.3_APIME I 0.000
HelroG110615 Helobdella robusta HelroG110615 N 0.000
LotgiG179263 Lottia gigantea LotgiG179263 N 0.000
PHUM505970 Pediculus humanus PHUM505970 I 0.000
SMAR013730 Strigamia maritima SMAR013730 N 0.000
TC004710 Tribolium castaneum TC004710 I 0.000
L798_12084 Zootermopsis nevadensis L798_12084 I 0.000