AT3G10030 (Arabidopsis thaliana)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AT3G10030 T247881_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00		 Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538		 (Direct) (Direct)
AT3G10030
M06971_2.00		 Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a		 (Direct) (Direct)
AT3G10030
M06972_2.00		 Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.951 0.811
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01258_2.00 MADF 51 132

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G10030.1 MADF 165 246
AT3G10030.2 MADF 165 246

Links

Other MADF family TFs
Other Arabidopsis thaliana TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pm.C_scaffold_1000227 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000227 N
scaffold_100350.1 Arabidopsis lyrata scaffold_100350.1 N
NAC006 Arabidopsis thaliana AT1G03490 N
Carubv10012206m.g Capsella rubella Carubv10012206m.g N
Thhalv10009374m.g Eutrema salsugineum Thhalv10009374m.g N