Bostr.0556s0275 (Boechera stricta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Bostr.0556s0275 T250580_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.955 0.794
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.955 0.765
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.949 0.588
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.945 0.706
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.930 0.662
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.930 0.662
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.930 0.662
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.928 0.676
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.925 0.647
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.922 0.544
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.915 0.706
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.908 0.721
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.908 0.721
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.908 0.721
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.897 0.632
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.833 0.397
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.0556s0275.1.p MADF 72 142

Links

Other MADF family TFs
Other Boechera stricta TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.949
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.913
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.921
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.944
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.925
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.955
GT-1 Arabidopsis thaliana AT1G13450 D 0.930
GT-4 Arabidopsis thaliana AT3G25990 D 0.908
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.911
Bo8g107400 Brassica oleracea Bo8g107400 I 0.917
Bo5g017510 Brassica oleracea Bo5g017510 I 0.900
Bo2g138840 Brassica oleracea Bo2g138840 I 0.891
Bra036354 Brassica rapa Bra036354 I 0.889
Bra026903 Brassica rapa Bra026903 I 0.917
Bra019721 Brassica rapa Bra019721 I 0.900
PK20543.1 Cannabis sativa PK20543.1 D 0.955
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.952
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.916
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.952
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.916
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.917
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.938
Ca_11315 Cicer arietinum Ca_11315 I 0.945
Cla023054 Citrullus lanatus Cla023054 I 0.923
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.937
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.937
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.923
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.930
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.953
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.945
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.917
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.949
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.949
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.951
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.949
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.897
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.937
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.934
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.922
MDP0000164819 Malus domestica MDP0000164819 D 0.915
MDP0000275412 Malus domestica MDP0000275412 I 0.934
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.945
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.945
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.922
mgf016368m Mimulus guttatus mgf016368m I 0.900
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.927
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.958
OB04G23970 Oryza brachyantha OB04G23970 I 0.903
OS04G0486400 Oryza sativa OS04G0486400 D 0.897
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.899
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.920
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.951
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.915
Pm016214 Prunus mume Pm016214 I 0.937
Pm006885 Prunus mume Pm006885 I 0.915
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.937
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.942
29929.m004704 Ricinus communis 29929.m004704 D 0.928
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.934
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.949
Si036121m.g Setaria italica Si036121m.g I 0.897
Si010147m.g Setaria italica Si010147m.g I 0.908
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.935
TCM_010751 Theobroma cacao TCM_010751 I 0.951
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.949
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.960
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.833
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.897