Bra011509 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra011509 T253263_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.958 0.958
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.958 0.958
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.896 0.896
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.792 0.792
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.792 0.792
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.792 0.792
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.792 0.792
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.792 0.792
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.792 0.792
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.792 0.792
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.771 0.771
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.771 0.771
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.771 0.771
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.771 0.771
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.771 0.771
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.750 0.750
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.750 0.750
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.750 0.750
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.750 0.750
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.750 0.750
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.750 0.750
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.750 0.750
Q9LEI1_HORVU
M10984_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM7_01 		0.750 0.750
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.750 0.750
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.750 0.750
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.750 0.750
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.750 0.750
MADS1
M10969_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_02 		0.750 0.750
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.750 0.750
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.750 0.750
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.750 0.750
MADS5
M10970_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_02 		0.750 0.750
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.750 0.750
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.750 0.750
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.750 0.750
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.750 0.750
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.729 0.729
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.729 0.729
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.729 0.729
SEP1
M02696_2.00 		Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN		 SELEX
Mathelier et al.(2014)
MA0584.1 		0.729 0.729
SEP3
M08143_2.00 		Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG		 ChIP-seq
Mathelier et al.(2014)
MA0563.1 		0.729 0.729
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.729 0.729
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.729 0.729
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.729 0.729
SEP1
M10929_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_01 		0.729 0.729
SEP1
M10930_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_02 		0.729 0.729
SEP3
M10902_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL9_01 		0.729 0.729
AGL9_PETHY
M10993_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP2_01 		0.729 0.729
Q9ATE6_PETHY
M11009_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP23_01 		0.729 0.729
Q9ATF3_PETHY
M11015_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP4_01 		0.729 0.729
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.729 0.729
O82084_MALDO
M11018_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_01 		0.729 0.729
Q6UGQ8_PETHY
M11005_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_01 		0.729 0.729
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.729 0.729
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.729 0.729
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.729 0.729
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.729 0.729
MADS7
M10975_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_02 		0.729 0.729
MADS8
M10976_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_01 		0.729 0.729
Q9SBA6_MALDO
M11028_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_02 		0.729 0.729
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.729 0.729
Q84LI3_WHEAT
M10979_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT1_01 		0.729 0.729
O82128_WHEAT
M10965_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WAP1_01 		0.729 0.729
AGL13
M06989_2.00 		Arabidopsis thaliana
WTWCYHAAAAWRGWAADW
WHTTWCYWTTTTDRGWAW		 Dap-seq
OMalley et al.(2016)
AGL13_col_b 		0.708 0.708
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
SEP2
M10916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL4_01 		0.708 0.708
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.708 0.708
Q9LEH9_HORVU
M10983_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM9_01 		0.708 0.708
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.708 0.708
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.708 0.708
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra011509.1-P MADS box 10 57

Links

Other MADS box family TFs
Other Brassica rapa TFs

1529 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARB_03643 Arthroderma benhamiae ARB_03643 I 0.000
fgenesh1_pg.00815_#_163 Aspergillus carbonarius fgenesh1_pg.00815_#_163 N 0.000
AFUA_2G14680 Aspergillus fumigatus CADAFUAG00004828 N 0.000
flbB Aspergillus nidulans CADANIAG00000648 N 0.000
CADANGAG00012050 Aspergillus niger CADANGAG00012050 N 0.000
CADAORAG00008810 Aspergillus oryzae CADAORAG00008810 I 0.000
EURHEDRAFT_518989 Aspergillus ruber EURHEDRAFT_518989 I 0.000
BAUCODRAFT_249790 Baudoinia compniacensis BAUCODRAFT_249790 I 0.000
BDDG_01351 Blastomyces dermatitidis BDDG_01351 N 0.000
PVAR5_8450 Byssochlamys spectabilis PVAR5_8450 N 0.000
A1O1_05447 Capronia coronata A1O1_05447 I 0.000
A1O3_09301 Capronia epimyces A1O3_09301 N 0.000
PV04_07337 Capronia semiimmersa PV04_07337 N 0.000
CTHT_0003600 Chaetomium thermophilum CTHT_0003600 I 0.000
Z519_07258 Cladophialophora bantiana Z519_07258 N 0.000
G647_03181 Cladophialophora carrionii G647_03181 I 0.000
PV07_11049 Cladophialophora immunda PV07_11049 N 0.000
A1O5_02721 Cladophialophora psammophila A1O5_02721 N 0.000
A1O7_06912 Cladophialophora yegresii A1O7_06912 N 0.000
CPUR_01747 Claviceps purpurea CPUR_01747 I 0.000
CIMG_02371 Coccidioides immitis CIMG_02371 N 0.000
CPC735_040120 Coccidioides posadasii CPC735_040120 N 0.000
CFIO01_11126 Colletotrichum fioriniae CFIO01_11126 I 0.000
CGGC5_2437 Colletotrichum gloeosporioides CGGC5_2437 I 0.000
GLRG_03942 Colletotrichum graminicola GLRG_03942 I 0.000
CH063_05360 Colletotrichum higginsianum CH063_05360 I 0.000
Cob_01611 Colletotrichum orbiculare Cob_01611 I 0.000
CSUB01_01401 Colletotrichum sublineola CSUB01_01401 I 0.000
EPUS_06691 Endocarpon pusillum EPUS_06691 N 0.000
UCREL1_941 Eutypa lata UCREL1_941 I 0.000
A1O9_12160 Exophiala aquamarina A1O9_12160 N 0.000
HMPREF1120_07543 Exophiala dermatitidis HMPREF1120_07543 N 0.000
PV10_03189 Exophiala mesophila PV10_03189 I 0.000
PV11_09613 Exophiala sideris PV11_09613 N 0.000
PV08_00976 Exophiala spinifera PV08_00976 N 0.000
PV05_10158 Exophiala xenobiotica PV05_10158 N 0.000
Z517_02456 Fonsecaea pedrosoi Z517_02456 I 0.000
FFUJ_01507 Fusarium fujikuroi FFUJ_01507 I 0.000
FGRRES_01313 Fusarium graminearum FGRRES_01313 I 0.000
FOXG_00073 Fusarium oxysporum FOXG_00073 I 0.000
FPSE_03349 Fusarium pseudograminearum FPSE_03349 I 0.000
FVEG_01443 Fusarium verticillioides FVEG_01443 I 0.000
GGTG_01216 Gaeumannomyces graminis GGTG_01216 I 0.000
CMQ_566 Grosmannia clavigera CMQ_566 I 0.000
HCBG_09056 Histoplasma capsulatum HCBG_09056 N 0.000
MGG_00342 Magnaporthe oryzae MGG_00342 I 0.000
MAPG_08236 Magnaporthe poae MAPG_08236 I 0.000
MAC_07148 Metarhizium acridum MAC_07148 I 0.000
MAM_03661 Metarhizium album MAM_03661 I 0.000
MANI_013653 Metarhizium anisopliae MANI_013653 I 0.000
MBR_06029 Metarhizium brunneum MBR_06029 I 0.000
MGU_06448 Metarhizium guizhouense MGU_06448 I 0.000
MAJ_04559 Metarhizium majus MAJ_04559 I 0.000
X797_005785 Metarhizium robertsii X797_005785 I 0.000
MGYG_05249 Microsporum gypseum MGYG_05249 N 0.000
MYCTH_2297066 Myceliophthora thermophila MYCTH_2297066 I 0.000
NFIA_089910 Neosartorya fischeri CADNFIAG00007772 N 0.000
OIDMADRAFT_202703 Oidiodendron maius OIDMADRAFT_202703 I 0.000
PABG_03746 Paracoccidioides brasiliensis PABG_03746 N 0.000
PAAG_01697 Paracoccidioides sp lutzii PAAG_01697 N 0.000
Pc12g01640 Penicillium chrysogenum Pc12g01640 I 0.000
PDIP_02990 Penicillium digitatum PDIP_02990 I 0.000
PEX1_081340 Penicillium expansum PEX1_081340 I 0.000
PITC_020790 Penicillium italicum PITC_020790 I 0.000
PMAA_100250 Penicillium marneffei PMAA_100250 I 0.000
PDE_06387 Penicillium oxalicum PDE_06387 N 0.000
PCH_Pc12g01640 Penicillium rubens PCH_Pc12g01640 I 0.000
U727_00431281371 Penicillium solitum U727_00431281371 I 0.000
PFICI_01432 Pestalotiopsis fici PFICI_01432 I 0.000
PODANS_1_17900 Podospora anserina PODANS_1_17900 I 0.000
Z518_09586 Rhinocladiella mackenziei Z518_09586 N 0.000
SBOR_9585 Sclerotinia borealis SBOR_9585 I 0.000
SMAC_00328 Sordaria macrospora SMAC_00328 I 0.000
SPBR_07829 Sporothrix brasiliensis SPBR_07829 I 0.000
HMPREF1624_07695 Sporothrix schenckii HMPREF1624_07695 I 0.000
SNOG_04391 Stagonospora nodorum SNOG_04391 I 0.000
PMAA_100250 Talaromyces marneffei PMAA_100250 I 0.000
UCRPA7_4041 Togninia minima UCRPA7_4041 I 0.000
TEQG_00005 Trichophyton equinum TEQG_00005 I 0.000
H101_02270 Trichophyton interdigitale H101_02270 I 0.000
H102_06775 Trichophyton rubrum H102_06775 I 0.000
H105_06815 Trichophyton soudanense H105_06815 I 0.000
TESG_03658 Trichophyton tonsurans TESG_03658 I 0.000
TRV_01964 Trichophyton verrucosum TRV_01964 I 0.000
VDBG_06054 Verticillium albo atrum VDBG_06054 I 0.000
VDBG_06054 Verticillium alfalfae VDBG_06054 I 0.000
VDAG_03214 Verticillium dahliae VDAG_03214 I 0.000