BRADI1G72150 (Brachypodium distachyon)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 BRADI1G72150 T253398_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.833 0.833
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.812 0.812
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.812 0.812
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.771 0.771
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.771 0.771
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.771 0.771
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.729 0.729
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.729 0.729
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.729 0.729
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.729 0.729
Q8GT99_TOBAC
M11006_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_02 		0.729 0.729
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.729 0.729
Q9SBQ1_PETHY
M11017_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PFG_01 		0.729 0.729
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.729 0.729
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.708 0.708
AP1
M08144_2.00 		Arabidopsis thaliana
MYAAAAAWRGAAA
TTTCYWTTTTTRK		 ChIP-seq
Mathelier et al.(2014)
MA0940.1 		0.708 0.708
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.708 0.708
SEP2
M10916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL4_01 		0.708 0.708
Q9LEH9_HORVU
M10983_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM9_01 		0.708 0.708
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.708 0.708
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.708 0.708
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.708 0.708
AP1
M10905_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSA_Q2 		0.708 0.708
Q84LI3_WHEAT
M10979_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT1_01 		0.708 0.708
O82128_WHEAT
M10965_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WAP1_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI1G72150.1 MADS box 12 59
BRADI1G72150.2 MADS box 12 59
BRADI1G72150.4 MADS box 12 59
BRADI1G72150.5 MADS box 12 59
BRADI1G72150.7 MADS box 12 59

Links

Other MADS box family TFs
Other Brachypodium distachyon TFs

842 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_003_00556 Aquilegia coerulea Aquca_003_00556 I 0.000
Aquca_022_00003 Aquilegia coerulea Aquca_022_00003 I 0.000
Aquca_024_00067 Aquilegia coerulea Aquca_024_00067 N 0.000
BRADI2G38380 Brachypodium distachyon BRADI2G38380 N 0.000
Bra039631 Brassica rapa Bra039631 I 0.000
PK07533.1 Cannabis sativa PK07533.1 I 0.000
PK03779.1 Cannabis sativa PK03779.1 I 0.000
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I 0.000
Cla016841 Citrullus lanatus Cla016841 I 0.000
Ciclev10029834m.g Citrus clementina Ciclev10029834m.g I 0.000
orange1.1g044691m.g Citrus sinensis orange1.1g044691m.g I 0.000
Cucsa.109420 Cucumis sativus Cucsa.109420 I 0.000
Cucsa.248080 Cucumis sativus Cucsa.248080 N 0.000
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I 0.000
GLYMA11G12240 Glycine max GLYMA11G12240 I 0.000
GLYMA12G04440 Glycine max GLYMA12G04440 I 0.000
Gorai.008G065300 Gossypium raimondii Gorai.008G065300 I 0.000
Gorai.001G144200 Gossypium raimondii Gorai.001G144200 I 0.000
Gorai.007G122800 Gossypium raimondii Gorai.007G122800 I 0.000
MLOC_52125 Hordeum vulgare MLOC_52125 N 0.000
Lus10040428.g Linum usitatissimum Lus10040428.g I 0.000
Lus10025024.g Linum usitatissimum Lus10025024.g I 0.000
Lus10010005.g Linum usitatissimum Lus10010005.g I 0.000
MDP0000205823 Malus domestica MDP0000205823 I 0.000
MDP0000239026 Malus domestica MDP0000239026 I 0.000
cassava42526.valid.m1 Manihot esculenta cassava42526.valid.m1 N 0.000
cassava1498.valid.m1 Manihot esculenta cassava1498.valid.m1 N 0.000
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I 0.000
MTR_1g087040 Medicago truncatula MTR_1g087040 I 0.000
mgf018581m Mimulus guttatus mgf018581m I 0.000
GSMUA_Achr8G29960_001 Musa acuminata GSMUA_Achr8G29960_001 I 0.000
GSMUA_Achr4G03790_001 Musa acuminata GSMUA_Achr4G03790_001 I 0.000
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I 0.000
GSMUA_Achr11G20700_001 Musa acuminata GSMUA_Achr11G20700_001 I 0.000
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I 0.000
OBART05G02070 Oryza barthii OBART05G02070 N 0.000
OB05G12090 Oryza brachyantha OB05G12090 N 0.000
ORGLA05G0020300 Oryza glaberrima ORGLA05G0020300 N 0.000
OGLUM05G02130 Oryza glumaepatula OGLUM05G02130 N 0.000
BGIOSGA019118 Oryza indica BGIOSGA019118 I 0.000
BGIOSGA019116 Oryza indica BGIOSGA019116 N 0.000
OMERI05G02170 Oryza meridionalis OMERI05G02170 N 0.000
ONIVA05G02010 Oryza nivara ONIVA05G02010 I 0.000
OPUNC05G01750 Oryza punctata OPUNC05G01750 N 0.000
ORUFI05G02170 Oryza rufipogon ORUFI05G02170 N 0.000
OS05G0129300 Oryza sativa OS05G0129300 N 0.000
Pavir.J06041 Panicum virgatum Pavir.J06041 N 0.000
Pavir.Ca00746 Panicum virgatum Pavir.Ca00746 N 0.000
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I 0.000
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I 0.000
POPTR_0002s19720 Populus trichocarpa POPTR_0002s19720 I 0.000
30076.m004659 Ricinus communis 30076.m004659 I 0.000
30131.m007078 Ricinus communis 30131.m007078 I 0.000
SapurV1A.0158s0220 Salix purpurea SapurV1A.0158s0220 I 0.000
SapurV1A.0396s0080 Salix purpurea SapurV1A.0396s0080 I 0.000
SapurV1A.3521s0020 Salix purpurea SapurV1A.3521s0020 I 0.000
Solyc02g084860.1 Solanum lycopersicum Solyc02g084860.1 I 0.000
Solyc03g033730.1 Solanum lycopersicum Solyc03g033730.1 I 0.000
PGSC0003DMG400003529 Solanum tuberosum PGSC0003DMG400003529 I 0.000
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I 0.000
Traes_1AS_94B6230FB1 Triticum aestivum Traes_1AS_94B6230FB1 N 0.000
Traes_1BS_A44C97E0F Triticum aestivum Traes_1BS_A44C97E0F N 0.000
Traes_1DS_62FDD3493 Triticum aestivum Traes_1DS_62FDD3493 N 0.000
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I 0.000