BRADI3G57017 (Brachypodium distachyon)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 BRADI3G57017 T253422_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL16
M06987_2.00
Arabidopsis thaliana
TWCCHAAWDDGGWAA

TTWCCHHWTTDGGWA
Dap-seq
OMalley et al.(2016)
AGL16_col_a
0.854 0.854
AGL16
M06988_2.00
Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS

STTTCCHWWTWDGGWAANWHW
Dap-seq
OMalley et al.(2016)
AGL16_colamp_a
0.854 0.854
Q9FVN1_MAIZE
M10982_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_03
0.833 0.833
MADS2
M10966_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_02
0.792 0.792
AG
M02695_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHADN

NHTDCCHNWTWWGGWAAD
SELEX
Mathelier et al.(2014)
MA0005.2
0.771 0.771
AG
M10923_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN

NHTDCCHNWTWWGGWAAD
Transfac
Matys et al.(2006)
P$AG_01
0.771 0.771
AG
M10924_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_02
0.771 0.771
AG
M10925_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_03
0.771 0.771
AG_TOBAC
M10995_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG1_02
0.771 0.771
AG
M10926_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_Q2
0.771 0.771
Q9ATE8_PETHY
M11011_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP21_01
0.771 0.771
Q08711_PETHY
M10999_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP6_01
0.771 0.771
O82698_MALDO
M11021_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS10_01
0.771 0.771
Q40591_TOBAC
M11002_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_03
0.771 0.771
O82699_MALDO
M11022_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.771 0.771
MADS3_ORYSJ
M10963_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_01
0.771 0.771
AG_PETHY
M10994_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_02
0.771 0.771
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW

WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.750 0.750
AGL1
M02694_2.00
Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN

NDTWCCHNWWWWGGHAHN
SELEX
Mathelier et al.(2014)
MA0585.1
0.750 0.750
AGL1
M10920_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_01
0.750 0.750
AGL1
M10921_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_02
0.750 0.750
Q9AR49_MAIZE
M10980_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M29_01
0.750 0.750
Q8VWZ3_MALDO
M11025_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_02
0.750 0.750
Q8VWZ2_MALDO
M11024_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_02
0.750 0.750
MAD17_ORYSJ
M10961_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.750 0.750
MADS50
M10968_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.750 0.750
MADS6
M10967_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.750 0.750
SHP2
M10914_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SHP2_01
0.750 0.750
Q84LI3_WHEAT
M10979_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAVRT1_01
0.750 0.750
O82128_WHEAT
M10965_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WAP1_01
0.750 0.750
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND

HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.729 0.729
SOC1
M10915_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.729 0.729
SEP2
M10916_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL4_01
0.729 0.729
Q9LEI3_HORVU
M10985_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM3_01
0.729 0.729
Q9LEH9_HORVU
M10983_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM9_01
0.729 0.729
Q9ATE9_PETHY
M11012_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP20_01
0.729 0.729
Q9ATE7_PETHY
M11010_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP22_01
0.729 0.729
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.729 0.729
Q9ATF1_PETHY
M11013_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP9_01
0.729 0.729
M17_MAIZE
M10959_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.729 0.729
Q8GT99_TOBAC
M11006_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_02
0.729 0.729
Q9ST54_MALDO
M11029_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_04
0.729 0.729
O82697_MALDO
M11020_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_01
0.729 0.729
Q9SBQ1_PETHY
M11017_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PFG_01
0.729 0.729
Solyc05g012020.2
M10986_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_01
0.729 0.729
Solyc05g012020.2
M10987_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2_01
0.729 0.729
Solyc05g012020.2
M10988_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2
0.729 0.729
AGL13
M06989_2.00
Arabidopsis thaliana
WTWCYHAAAAWRGWAADW

WHTTWCYWTTTTDRGWAW
Dap-seq
OMalley et al.(2016)
AGL13_col_b
0.708 0.708
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA

TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.708 0.708
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW

WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.708 0.708
squamosa
M02697_2.00
Antirrhinum majus
MYAWAWAWRGHAAN

NTTDCYWTWTWTRK
SELEX
Mathelier et al.(2014)
MA0082.1
0.708 0.708
SEP1
M02696_2.00
Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB

VWTDCYAWWWWTGGNWHN
SELEX
Mathelier et al.(2014)
MA0584.1
0.708 0.708
SEP3
M08143_2.00
Arabidopsis thaliana
CCAAAAAWRGN

NCYWTTTTTGG
ChIP-seq
Mathelier et al.(2014)
MA0563.1
0.708 0.708
AP1
M08144_2.00
Arabidopsis thaliana
MYAAAAAWRGAAA

TTTCYWTTTTTRK
ChIP-seq
Mathelier et al.(2014)
MA0940.1
0.708 0.708
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH

DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.708 0.708
SEP1
M10929_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_01
0.708 0.708
SEP1
M10930_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_02
0.708 0.708
SEP3
M10902_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL9_01
0.708 0.708
Q40882_PETHY
M11003_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP11_01
0.708 0.708
AGL9_PETHY
M10993_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP2_01
0.708 0.708
Q9ATE6_PETHY
M11009_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP23_01
0.708 0.708
Q9ATF3_PETHY
M11015_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP4_01
0.708 0.708
O82084_MALDO
M11018_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_01
0.708 0.708
Q6UGQ8_PETHY
M11005_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS12_01
0.708 0.708
MAD14_ORYSJ
M10960_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_01
0.708 0.708
MADS18
M10973_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS18_01
0.708 0.708
Q9LM09_TOBAC
M11016_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS4_01
0.708 0.708
MADS7
M10975_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_02
0.708 0.708
MADS8
M10976_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_01
0.708 0.708
Q9SBA6_MALDO
M11028_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_02
0.708 0.708
AP1
M10905_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSA_Q2
0.708 0.708
Q38742_ANTMA
M11000_2.00
Antirrhinum majus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SQUA_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G57017.1 MADS box 10 57
BRADI3G57017.2 MADS box 10 57
BRADI3G57017.3 MADS box 10 57

Links

Other MADS box family TFs
Other Brachypodium distachyon TFs

1472 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI003971 Acyrthosiphon pisum ACYPI003971 I
ENSAMEG00000008255 Ailuropoda melanoleuca ENSAMEG00000008255 I
ENSAMEG00000013456 Ailuropoda melanoleuca ENSAMEG00000013456 I
Alligator_sinensis_CCG003052.1 Alligator sinensis Alligator_sinensis_CCG003052.1 I
CEBPE Anolis carolinensis ENSACAG00000007268 I
CEBPB Anolis carolinensis ENSACAG00000015567 I
GB44204 Apis mellifera GB44204 I
Afo_R013999 Aptenodytes forsteri Afo_R013999 I
ENSAMXG00000018723 Astyanax mexicanus ENSAMXG00000018723 I
ENSAMXG00000026122 Astyanax mexicanus ENSAMXG00000026122 I
ACEP26309 Atta cephalotes ACEP26309 I
ENSP00000206513-D1 Bos grunniens ENSP00000206513-D1 I
CEBPE Bos taurus ENSBTAG00000005952 I
CEBPB Callithrix jacchus ENSCJAG00000000526 I
CEBPE Callithrix jacchus ENSCJAG00000008065 I
Cflo_01516--XP_394681.2_APIME Camponotus floridanus Cflo_01516--XP_394681.2_APIME I
ENSCAFG00000007407 Canis familiaris ENSCAFG00000007407 I
ENSCAFG00000011433 Canis familiaris ENSCAFG00000011433 I
CEBPB Canis familiaris ENSCAFG00000031326 I
ENSCPOG00000000811 Cavia porcellus ENSCPOG00000000811 I
CEBPE Cavia porcellus ENSCPOG00000014049 I
ENSCPOG00000023297 Cavia porcellus ENSCPOG00000023297 I
Cmyd_10017449 Chelonia mydas Cmyd_10017449 I
ENSCSAG00000016086 Chlorocebus sabaeus ENSCSAG00000016086 I
ENSCSAG00000018515 Chlorocebus sabaeus ENSCSAG00000018515 I
ENSCSAG00000018746 Chlorocebus sabaeus ENSCSAG00000018746 I
CLEC002077 Cimex lectularius CLEC002077 I
cebpa Danio rerio ENSDARG00000036074 I
cebpb Danio rerio ENSDARG00000042725 I
CEBPA Dasypus novemcinctus ENSDNOG00000041488 I
CEBPB Dasypus novemcinctus ENSDNOG00000041573 I
YQE_11799 Dendroctonus ponderosae YQE_11799 I
CEBPE Echinops telfairi ENSETEG00000000035 I
CEBPE Equus caballus ENSECAG00000012883 I
CEBPE Erinaceus europaeus ENSEEUG00000005848 I
CEBPE Felis catus ENSFCAG00000002334 I
ENSFALG00000007785 Ficedula albicollis ENSFALG00000007785 I
ENSFALG00000014081 Ficedula albicollis ENSFALG00000014081 I
ENSGMOG00000019534 Gadus morhua ENSGMOG00000019534 I
CEBPB Gallus gallus ENSGALG00000008014 I
EBP Gallus gallus ENSGALG00000026525 I
CEBPE Gorilla gorilla ENSGGOG00000007419 I
CEBPB Gorilla gorilla ENSGGOG00000025010 I
HHAL004160-PA Halyomorpha halys HHAL004160-PA I
Hsal_02456--XP_394681.2_APIME Harpegnathos saltator Hsal_02456--XP_394681.2_APIME I
CEBPE Homo sapiens ENSG00000092067 D
CEBPB Homo sapiens ENSG00000172216 D
CEBPA Homo sapiens ENSG00000245848 D
ENSSTOG00000007204 Ictidomys tridecemlineatus ENSSTOG00000007204 I
ENSLACG00000002076 Latimeria chalumnae ENSLACG00000002076 I
ENSLACG00000005924 Latimeria chalumnae ENSLACG00000005924 I
ENSLOCG00000017586 Lepisosteus oculatus ENSLOCG00000017586 I
ENSLOCG00000018358 Lepisosteus oculatus ENSLOCG00000018358 I
LDEC017703 Leptinotarsa decemlineata LDEC017703 I
ENSLAFG00000026180 Loxodonta africana ENSLAFG00000026180 I
CEBPA Loxodonta africana ENSLAFG00000030435 I
CEBPE Loxodonta africana ENSLAFG00000031400 I
ENSP00000206513 Macaca fascicularis ENSP00000206513 I
ENSMMUG00000004874 Macaca mulatta ENSMMUG00000004874 I
CEBPA Macaca mulatta ENSMMUG00000006124 I
CEBPE Macaca mulatta ENSMMUG00000019652 I
ENSMEUG00000000063 Macropus eugenii ENSMEUG00000000063 I
ENSMICG00000002591 Microcebus murinus ENSMICG00000002591 I
ML145410a Mnemiopsis leidyi ML145410a I
CEBPE Monodelphis domestica ENSMODG00000004586 I
ENSMODG00000016314 Monodelphis domestica ENSMODG00000016314 I
ENSMPUG00000006815 Mustela putorius furo ENSMPUG00000006815 I
ENSMPUG00000007593 Mustela putorius furo ENSMPUG00000007593 I
ENSMPUG00000019019 Mustela putorius furo ENSMPUG00000019019 I
Cebpa Mus musculus ENSMUSG00000034957 D
Cebpe Mus musculus ENSMUSG00000052435 D
Cebpb Mus musculus ENSMUSG00000056501 D
Myotis_brandtii_CEBPE_10009435 Myotis brandtii Myotis_brandtii_CEBPE_10009435 I
CEBPB Myotis lucifugus ENSMLUG00000002060 I
CEBPE Myotis lucifugus ENSMLUG00000030209 I
NV14868 Nasonia vitripennis NV14868 I
NEMVEDRAFT_v1g114346 Nematostella vectensis NEMVEDRAFT_v1g114346 I
ENSNLEG00000014958 Nomascus leucogenys ENSNLEG00000014958 I
Ogr08265 Ophisaurus gracilis Ogr08265 I
Ogr08532 Ophisaurus gracilis Ogr08532 I
ENSONIG00000021137 Oreochromis niloticus ENSONIG00000021137 I
ENSOANG00000007645 Ornithorhynchus anatinus ENSOANG00000007645 I
CEBPA Ornithorhynchus anatinus ENSOANG00000008144 I
CEBPE Oryctolagus cuniculus ENSOCUG00000022235 I
CEBPB Oryctolagus cuniculus ENSOCUG00000024667 I
cebpb Oryzias latipes ENSORLG00000015032 I
CEBPE Otolemur garnettii ENSOGAG00000001312 I
CEBPA Otolemur garnettii ENSOGAG00000024661 I
CEBPB Otolemur garnettii ENSOGAG00000026467 I
ENSOARG00000004414 Ovis aries ENSOARG00000004414 I
ENSOARG00000013395 Ovis aries ENSOARG00000013395 I
ENSOARG00000019360 Ovis aries ENSOARG00000019360 I
CEBPE Pan troglodytes ENSPTRG00000006162 I
CEBPA Pan troglodytes ENSPTRG00000038687 I
CEBPB Pan troglodytes ENSPTRG00000041263 I
ENSPANG00000002974 Papio anubis ENSPANG00000002974 I
ENSPANG00000007537 Papio anubis ENSPANG00000007537 I
ENSPANG00000019646 Papio anubis ENSPANG00000019646 I
PHUM433250 Pediculus humanus PHUM433250 I
ENSPSIG00000000363 Pelodiscus sinensis ENSPSIG00000000363 I
ENSPMAG00000004124 Petromyzon marinus ENSPMAG00000004124 I
ENSPFOG00000020954 Poecilia formosa ENSPFOG00000020954 I
Pvit_03335 Pogona vitticeps Pvit_03335 I
ENSPPYG00000005659 Pongo abelii ENSPPYG00000005659 I
ENSPPYG00000011124 Pongo abelii ENSPPYG00000011124 I
CEBPE Procavia capensis ENSPCAG00000015039 I
CEBPB Pteropus vampyrus ENSPVAG00000003541 I
CEBPE Pteropus vampyrus ENSPVAG00000005264 I
Cebpa Rattus norvegicus ENSRNOG00000010918 I
Cebpe Rattus norvegicus ENSRNOG00000014282 I
Cebpb Rattus norvegicus ENSRNOG00000057347 I
ENSSHAG00000013989 Sarcophilus harrisii ENSSHAG00000013989 I
ENSSHAG00000014918 Sarcophilus harrisii ENSSHAG00000014918 I
SINV13631 Solenopsis invicta SINV13631 I
CEBPE Sus scrofa ENSSSCG00000002033 I
CEBPA Sus scrofa ENSSSCG00000002866 I
ENSSSCG00000024816 Sus scrofa ENSSSCG00000024816 I
ENSSSCG00000028739 Sus scrofa ENSSSCG00000028739 I
CEBPB Taeniopygia guttata ENSTGUG00000008707 I
CEBPA Taeniopygia guttata ENSTGUG00000009472 I
cebpa Takifugu rubripes ENSTRUG00000006383 I
cebpb Takifugu rubripes ENSTRUG00000007449 I
cebpa Tetraodon nigroviridis ENSTNIG00000003102 I
TC009220 Tribolium castaneum TC009220 I
ENSTBEG00000017246 Tupaia belangeri ENSTBEG00000017246 I
CEBPB Tursiops truncatus ENSTTRG00000003985 I
CEBPE Tursiops truncatus ENSTTRG00000017229 I
CAA76309 Xenopus laevis CAA76309 I
cebpb.L Xenopus laevis XB-GENE-865306 I
cebpb Xenopus tropicalis XB-GENE-479779 I
cebpe Xenopus tropicalis XB-GENE-853430 I
ENSXMAG00000019665 Xiphophorus maculatus ENSXMAG00000019665 I
L798_13978 Zootermopsis nevadensis L798_13978 I