CFIO01_12657 (Colletotrichum fioriniae)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 CFIO01_12657 T253484_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.917 0.917
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.875 0.875
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.875 0.875
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.875 0.875
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.875 0.875
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.875 0.875
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.875 0.875
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.812 0.812
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.812 0.812
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.812 0.812
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.812 0.812
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.812 0.812
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.812 0.812
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.812 0.812
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.812 0.812
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.812 0.812
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.812 0.812
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.812 0.812
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.812 0.812
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.812 0.812
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.812 0.812
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.812 0.812
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.812 0.812
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.812 0.812
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.812 0.812
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.812 0.812
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.812 0.812
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.812 0.812
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.812 0.812
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.771 0.771
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.771 0.771
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EXF76552 MADS box 61 108

Links

Other MADS box family TFs
Other Colletotrichum fioriniae TFs

502 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000008541 Ailuropoda melanoleuca ENSAMEG00000008541 I
Alligator_sinensis_CCG021969.1 Alligator sinensis Alligator_sinensis_CCG021969.1 I
ENSAPLG00000009372 Anas platyrhynchos ENSAPLG00000009372 I
REST Anolis carolinensis ENSACAG00000002355 I
Afo_R012862 Aptenodytes forsteri Afo_R012862 I
ENSBTAP00000039405-D1 Bos grunniens ENSBTAP00000039405-D1 I
ENSP00000311816-D1 Bos grunniens ENSP00000311816-D1 I
ENSBTAG00000011789 Bos taurus ENSBTAG00000011789 I
ENSBTAG00000019359 Bos taurus ENSBTAG00000019359 I
Brh_R004325 Buceros rhinoceros Brh_R004325 I
REST Callithrix jacchus ENSCJAG00000004081 I
Aan_R014984 Calypte anna Aan_R014984 I
REST Canis familiaris ENSCAFG00000002254 I
Cmyd_10001870 Chelonia mydas Cmyd_10001870 N
ENSCSAG00000005119 Chlorocebus sabaeus ENSCSAG00000005119 I
rest Danio rerio ENSDARG00000103046 I
REST Dasypus novemcinctus ENSDNOG00000049113 I
REST Equus caballus ENSECAG00000022536 I
REST Erinaceus europaeus ENSEEUG00000001134 I
REST Felis catus ENSFCAG00000003904 I
ENSFALG00000006682 Ficedula albicollis ENSFALG00000006682 I
ENSGALG00000011390 Gallus gallus ENSGALG00000011390 I
Gfo_R000933 Geospiza fortis Gfo_R000933 I
REST Gorilla gorilla ENSGGOG00000002165 I
REST Homo sapiens ENSG00000084093 D
ENSSTOG00000007375 Ictidomys tridecemlineatus ENSSTOG00000007375 I
REST Loxodonta africana ENSLAFG00000003195 I
ENSP00000311816 Macaca fascicularis ENSP00000311816 I
REST Macaca mulatta ENSMMUG00000018821 I
ENSMEUG00000010330 Macropus eugenii ENSMEUG00000010330 I
ENSMGAG00000008536 Meleagris gallopavo ENSMGAG00000008536 I
ENSMICG00000017078 Microcebus murinus ENSMICG00000017078 I
ENSMODG00000020702 Monodelphis domestica ENSMODG00000020702 I
Rest Mus musculus ENSMUSG00000029249 D
Myotis_brandtii_REST_10026791 Myotis brandtii Myotis_brandtii_REST_10026791 I
REST Myotis lucifugus ENSMLUG00000014530 I
ENSNLEG00000008836 Nomascus leucogenys ENSNLEG00000008836 I
REST Ochotona princeps ENSOPRG00000008088 I
REST Oryctolagus cuniculus ENSOCUG00000001776 I
ENSOGAG00000015986 Otolemur garnettii ENSOGAG00000015986 I
ENSOARG00000004929 Ovis aries ENSOARG00000004929 I
ENSOARG00000005019 Ovis aries ENSOARG00000005019 I
ENSPANG00000017819 Papio anubis ENSPANG00000017819 I
ENSPSIG00000002988 Pelodiscus sinensis ENSPSIG00000002988 I
Pvit_05779 Pogona vitticeps Pvit_05779 I
ENSPPYG00000014745 Pongo abelii ENSPPYG00000014745 I
REST Pteropus vampyrus ENSPVAG00000010391 I
Rest Rattus norvegicus ENSRNOG00000002074 D
ENSSHAG00000016270 Sarcophilus harrisii ENSSHAG00000016270 I
ENSSARG00000010385 Sorex araneus ENSSARG00000010385 I
REST Sus scrofa ENSSSCG00000023357 I
ENSSSCG00000008893 Sus scrofa ENSSSCG00000008893 I
ENSTGUG00000004749 Taeniopygia guttata ENSTGUG00000004749 I
REST Tupaia belangeri ENSTBEG00000014480 I
ENSTTRG00000010832 Tursiops truncatus ENSTTRG00000010832 N
Tal_R011864 Tyto alba Tal_R011864 I
REST Vicugna pacos ENSVPAG00000000465 N
rest.L Xenopus laevis XB-GENE-6256442 I
rest.S Xenopus laevis XB-GENE-955471 I
rest Xenopus tropicalis XB-GENE-955466 I