CPIJ008335 (Culex quinquefasciatus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 CPIJ008335 T253525_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.788 0.788
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.788 0.788
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.758 0.758
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.758 0.758
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.758 0.758
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.758 0.758
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.758 0.758
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.758 0.758
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.758 0.758
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.758 0.758
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.758 0.758
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.758 0.758
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.758 0.758
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.758 0.758
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.758 0.758
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.758 0.758
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.758 0.758
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.758 0.758
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.758 0.758
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.758 0.758
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.758 0.758
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.758 0.758
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.758 0.758
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.758 0.758
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.758 0.758
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CPIJ008335-PA MADS box 44 76

Links

Other MADS box family TFs
Other Culex quinquefasciatus TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CADAFLAG00003334 Aspergillus flavus CADAFLAG00003334 N 0.000
ANIA_01584 Aspergillus nidulans CADANIAG00008217 N 0.000
EURHEDRAFT_415639 Aspergillus ruber EURHEDRAFT_415639 N 0.000
COCC4DRAFT_130965 Bipolaris maydis COCC4DRAFT_130965 N 0.000
COCC4DRAFT_157715 Bipolaris maydis COCC4DRAFT_157715 N 0.000
COCMIDRAFT_30122 Bipolaris oryzae COCMIDRAFT_30122 N 0.000
COCSADRAFT_130198 Bipolaris sorokiniana COCSADRAFT_130198 N 0.000
COCSADRAFT_34052 Bipolaris sorokiniana COCSADRAFT_34052 N 0.000
COCVIDRAFT_107313 Bipolaris victoriae COCVIDRAFT_107313 N 0.000
COCVIDRAFT_20793 Bipolaris victoriae COCVIDRAFT_20793 N 0.000
COCCADRAFT_34908 Bipolaris zeicola COCCADRAFT_34908 N 0.000
COCCADRAFT_40088 Bipolaris zeicola COCCADRAFT_40088 N 0.000
A1O1_00464 Capronia coronata A1O1_00464 N 0.000
A1O1_02535 Capronia coronata A1O1_02535 N 0.000
PV04_07764 Capronia semiimmersa PV04_07764 N 0.000
estExt_Genewise1Plus.C_70733 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_70733 N 0.000
H072_3849 Dactylellina haptotyla H072_3849 N 0.000
PV06_07837 Exophiala oligosperma PV06_07837 N 0.000
PV06_11257 Exophiala oligosperma PV06_11257 N 0.000
PV06_11661 Exophiala oligosperma PV06_11661 N 0.000
PV06_11680 Exophiala oligosperma PV06_11680 N 0.000
PV11_06316 Exophiala sideris PV11_06316 N 0.000
PV08_03348 Exophiala spinifera PV08_03348 N 0.000
PV05_04423 Exophiala xenobiotica PV05_04423 N 0.000
FFUJ_11117 Fusarium fujikuroi FFUJ_11117 N 0.000
NechaG88155 Fusarium solani NechaG88155 N 0.000
KUCA_T00003996001 Kuraishia capsulata KUCA_T00003996001 N 0.000
KUCA_T00003984001 Kuraishia capsulata KUCA_T00003984001 N 0.000
KUCA_T00003114001 Kuraishia capsulata KUCA_T00003114001 N 0.000
KUCA_T00000013001 Kuraishia capsulata KUCA_T00000013001 N 0.000
KUCA_T00000009001 Kuraishia capsulata KUCA_T00000009001 N 0.000
LEMA_P012820.1 Leptosphaeria maculans LEMA_P012820.1 N 0.000
MAC_06969 Metarhizium acridum MAC_06969 N 0.000
MBR_08966 Metarhizium brunneum MBR_08966 N 0.000
MGU_09044 Metarhizium guizhouense MGU_09044 N 0.000
MAJ_08159 Metarhizium majus MAJ_08159 N 0.000
X797_009392 Metarhizium robertsii X797_009392 N 0.000
fgenesh1_pg.sca_28_chr13_5_0000057 Nectria haematococca fgenesh1_pg.sca_28_chr13_5_0000057 N 0.000
PEX1_062920 Penicillium expansum PEX1_062920 N 0.000
PCH_Pc13g03330 Penicillium rubens PCH_Pc13g03330 N 0.000
U727_00432581551 Penicillium solitum U727_00432581551 N 0.000
PFICI_00049 Pestalotiopsis fici PFICI_00049 N 0.000
SNOG_11030 Phaeosphaeria nodorum SNOG_11030 N 0.000
SS1G_05808 Sclerotinia sclerotiorum SS1G_05808 N 0.000
SETTUDRAFT_92771 Setosphaeria turcica SETTUDRAFT_92771 N 0.000
HMPREF1624_03990 Sporothrix schenckii HMPREF1624_03990 N 0.000
SNOG_11030 Stagonospora nodorum SNOG_11030 N 0.000
VHEMI00089 Torrubiella hemipterigena VHEMI00089 N 0.000