SRF (Cavia porcellus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ENSCPOG00000022327 T253608_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.963 0.963
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.963 0.963
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.963 0.963
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.963 0.963
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.963 0.963
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.963 0.963
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.963 0.963
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.963 0.963
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.963 0.963
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.963 0.963
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.963 0.963
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.963 0.963
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.963 0.963
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.963 0.963
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.963 0.963
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.963 0.963
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.963 0.963
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.963 0.963
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.963 0.963
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.963 0.963
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.963 0.963
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.963 0.963
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.963 0.963
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.926 0.926
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.926 0.926
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.852 0.852
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.815 0.815
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.815 0.815
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.815 0.815
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.815 0.815
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.815 0.815
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.815 0.815
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000015471 MADS box 16 42

Links

Other MADS box family TFs
Other Cavia porcellus TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARB_00440 Arthroderma benhamiae ARB_00440 I
e_gw1.00083.362.1 Aspergillus carbonarius e_gw1.00083.362.1 I
ACLA_025830 Aspergillus clavatus CADACLAG00002824 I
CADAFLAG00004009 Aspergillus flavus CADAFLAG00004009 I
AFUA_1G09670 Aspergillus fumigatus CADAFUAG00007221 I
ANIA_01298 Aspergillus nidulans CADANIAG00001319 D
CADANGAG00006457 Aspergillus niger CADANGAG00006457 I
CADAORAG00006402 Aspergillus oryzae CADAORAG00006402 I
EURHEDRAFT_415231 Aspergillus ruber EURHEDRAFT_415231 I
ATEG_04204 Aspergillus terreus CADATEAG00009987 I
BBA_08083 Beauveria bassiana BBA_08083 I
BDDG_06829 Blastomyces dermatitidis BDDG_06829 I
PVAR5_5311 Byssochlamys spectabilis PVAR5_5311 I
A1O1_06603 Capronia coronata A1O1_06603 I
A1O3_05723 Capronia epimyces A1O3_05723 I
PV04_06676 Capronia semiimmersa PV04_06676 I
Z519_03796 Cladophialophora bantiana Z519_03796 I
G647_06262 Cladophialophora carrionii G647_06262 I
PV07_03563 Cladophialophora immunda PV07_03563 I
A1O5_08857 Cladophialophora psammophila A1O5_08857 I
A1O7_06270 Cladophialophora yegresii A1O7_06270 I
CPUR_03208 Claviceps purpurea CPUR_03208 I
CIMG_10254 Coccidioides immitis CIMG_10254 I
CPC735_013440 Coccidioides posadasii CPC735_013440 I
CFIO01_07294 Colletotrichum fioriniae CFIO01_07294 N
CGGC5_8357 Colletotrichum gloeosporioides CGGC5_8357 I
GLRG_03872 Colletotrichum graminicola GLRG_03872 N
CH063_06329 Colletotrichum higginsianum CH063_06329 I
Cob_01730 Colletotrichum orbiculare Cob_01730 N
CSUB01_10562 Colletotrichum sublineola CSUB01_10562 N
W97_00703 Coniosporium apollinis W97_00703 I
CCM_01116 Cordyceps militaris CCM_01116 I
HMPREF1541_08750 Cyphellophora europaea HMPREF1541_08750 N
EPUS_06221 Endocarpon pusillum EPUS_06221 I
A1O9_10773 Exophiala aquamarina A1O9_10773 I
HMPREF1120_04164 Exophiala dermatitidis HMPREF1120_04164 I
PV10_08565 Exophiala mesophila PV10_08565 N
PV06_10058 Exophiala oligosperma PV06_10058 I
PV11_07531 Exophiala sideris PV11_07531 I
PV08_08114 Exophiala spinifera PV08_08114 I
PV05_08012 Exophiala xenobiotica PV05_08012 I
Z517_01133 Fonsecaea pedrosoi Z517_01133 I
FFUJ_01501 Fusarium fujikuroi FFUJ_01501 I
FGRRES_01307 Fusarium graminearum FGRRES_01307 I
FOXG_00080 Fusarium oxysporum FOXG_00080 I
FPSE_01403 Fusarium pseudograminearum FPSE_01403 I
FVEG_01436 Fusarium verticillioides FVEG_01436 I
GGTG_01326 Gaeumannomyces graminis GGTG_01326 N
LEMA_P050050.1 Leptosphaeria maculans LEMA_P050050.1 I
MGG_05709 Magnaporthe oryzae MGG_05709 I
MAPG_06566 Magnaporthe poae MAPG_06566 N
MCYG_06262 Microsporum canis MCYG_06262 I
MGYG_06696 Microsporum gypseum MGYG_06696 I
MYCTH_2088766 Myceliophthora thermophila MYCTH_2088766 N
NFIA_015940 Neosartorya fischeri CADNFIAG00000638 I
PABG_03267 Paracoccidioides brasiliensis PABG_03267 I
PAAG_02798 Paracoccidioides sp lutzii PAAG_02798 I
Pc16g06560 Penicillium chrysogenum Pc16g06560 I
PDIP_40460 Penicillium digitatum PDIP_40460 I
PEX1_052970 Penicillium expansum PEX1_052970 I
PITC_023420 Penicillium italicum PITC_023420 I
PMAA_025110 Penicillium marneffei PMAA_025110 I
PDE_07053 Penicillium oxalicum PDE_07053 I
PCH_Pc16g06560 Penicillium rubens PCH_Pc16g06560 I
U727_0043047031 Penicillium solitum U727_0043047031 I
SNOG_15057 Phaeosphaeria nodorum SNOG_15057 I
Z518_05851 Rhinocladiella mackenziei Z518_05851 I
PMAA_025110 Talaromyces marneffei PMAA_025110 I
TSTA_073940 Talaromyces stipitatus TSTA_073940 I
UCRPA7_7634 Togninia minima UCRPA7_7634 N
VHEMI02386 Torrubiella hemipterigena VHEMI02386 I
TRIATDRAFT_148632 Trichoderma atroviride TRIATDRAFT_148632 I
TRIREDRAFT_58130 Trichoderma reesei TRIREDRAFT_58130 I
TRIVIDRAFT_173998 Trichoderma virens TRIVIDRAFT_173998 I
H102_01702 Trichophyton rubrum H102_01702 I
H105_01718 Trichophyton soudanense H105_01718 I
TESG_07003 Trichophyton tonsurans TESG_07003 I
TRV_02680 Trichophyton verrucosum TRV_02680 I
GSTUM_00003292001 Tuber melanosporum GSTUM_00003292001 I
UREG_03477 Uncinocarpus reesii UREG_03477 I
VDBG_05122 Verticillium albo atrum VDBG_05122 N
VDBG_05122 Verticillium alfalfae VDBG_05122 N
VDAG_08823 Verticillium dahliae VDAG_08823 N