ENSPPYG00000016633 (Pongo abelii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ENSPPYG00000016633 T253800_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		1.000 1.000
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		1.000 1.000
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		1.000 1.000
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		1.000 1.000
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		1.000 1.000
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		1.000 1.000
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		1.000 1.000
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		1.000 1.000
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		1.000 1.000
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		1.000 1.000
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		1.000 1.000
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		1.000 1.000
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		1.000 1.000
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		1.000 1.000
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		1.000 1.000
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		1.000 1.000
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		1.000 1.000
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		1.000 1.000
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		1.000 1.000
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		1.000 1.000
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		1.000 1.000
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		1.000 1.000
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.958 0.958
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.958 0.958
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.896 0.896
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.896 0.896
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.812 0.812
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.812 0.812
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.812 0.812
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.812 0.812
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.812 0.812
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000018605 MADS box 150 197

Links

Other MADS box family TFs
Other Pongo abelii TFs

519 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_005080 Acremonium chrysogenum ACRE_005080 I
ARB_04236 Arthroderma benhamiae ARB_04236 I
MCYG_05302 Arthroderma otae MCYG_05302 I
ACLA_027040 Aspergillus clavatus CADACLAG00002999 I
CADAFLAG00004136 Aspergillus flavus CADAFLAG00004136 I
CADANGAG00006293 Aspergillus niger CADANGAG00006293 I
EURHEDRAFT_22412 Aspergillus ruber EURHEDRAFT_22412 I
M437DRAFT_12002 Aureobasidium melanogenum M437DRAFT_12002 I
M438DRAFT_283552 Aureobasidium pullulans M438DRAFT_283552 I
AUEXF2481DRAFT_1990 Aureobasidium subglaciale AUEXF2481DRAFT_1990 I
BBA_03162 Beauveria bassiana BBA_03162 I
BDDG_09774 Blastomyces dermatitidis BDDG_09774 I
Bcin02g02300 Botrytis cinerea Bcin02g02300 I
PVAR5_6000 Byssochlamys spectabilis PVAR5_6000 I
A1O1_01715 Capronia coronata A1O1_01715 I
CHGG_10355 Chaetomium globosum CHGG_10355 I
CTHT_0008390 Chaetomium thermophilum CTHT_0008390 I
Z519_06848 Cladophialophora bantiana Z519_06848 I
G647_03448 Cladophialophora carrionii G647_03448 I
CPUR_08385 Claviceps purpurea CPUR_08385 I
CIMG_02531 Coccidioides immitis CIMG_02531 I
CPC735_037910 Coccidioides posadasii CPC735_037910 I
CFIO01_13406 Colletotrichum fioriniae CFIO01_13406 I
CGGC5_10716 Colletotrichum gloeosporioides CGGC5_10716 I
GLRG_07358 Colletotrichum graminicola GLRG_07358 I
CH063_01246 Colletotrichum higginsianum CH063_01246 I
Cob_07346 Colletotrichum orbiculare Cob_07346 I
CSUB01_09077 Colletotrichum sublineola CSUB01_09077 I
W97_01044 Coniosporium apollinis W97_01044 I
CCM_04761 Cordyceps militaris CCM_04761 I
gw1.2.720.1 Cryphonectria parasitica gw1.2.720.1 I
HMPREF1541_11021 Cyphellophora europaea HMPREF1541_11021 N
DOTSEDRAFT_69772 Dothistroma septosporum DOTSEDRAFT_69772 I
EPUS_06822 Endocarpon pusillum EPUS_06822 I
UCREL1_549 Eutypa lata UCREL1_549 I
PV10_03876 Exophiala mesophila PV10_03876 I
FFUJ_00821 Fusarium fujikuroi FFUJ_00821 I
FGRRES_00318 Fusarium graminearum FGRRES_00318 I
FPSE_07692 Fusarium pseudograminearum FPSE_07692 I
NechaG75076 Fusarium solani NechaG75076 I
GGTG_12982 Gaeumannomyces graminis GGTG_12982 I
CMQ_4895 Grosmannia clavigera CMQ_4895 I
MGG_15357 Magnaporthe oryzae MGG_15357 I
MAPG_08672 Magnaporthe poae MAPG_08672 I
MBM_02301 Marssonina brunnea MBM_02301 I
MAC_06559 Metarhizium acridum MAC_06559 I
MAM_00987 Metarhizium album MAM_00987 I
MANI_017733 Metarhizium anisopliae MANI_017733 I
MBR_05142 Metarhizium brunneum MBR_05142 I
MGU_01530 Metarhizium guizhouense MGU_01530 I
MAJ_07299 Metarhizium majus MAJ_07299 I
X797_006944 Metarhizium robertsii X797_006944 I
MCYG_05302 Microsporum canis MCYG_05302 I
MGYG_06353 Microsporum gypseum MGYG_06353 I
MYCTH_109046 Myceliophthora thermophila MYCTH_109046 I
gw1.2.915.1 Mycosphaerella graminicola gw1.2.915.1 I
fgenesh1_pg.sca_1_chr1_3_0000687 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0000687 I
NCU01706 Neurospora crassa NCU01706 D
fgenesh3_pm.C_scaffold_10000323 Neurospora discreta fgenesh3_pm.C_scaffold_10000323 I
NEUTE1DRAFT_101778 Neurospora tetrasperma NEUTE1DRAFT_101778 I
OCS_06093 Ophiocordyceps sinensis OCS_06093 I
F503_04373 Ophiostoma piceae uamh F503_04373 I
Pc12g05270 Penicillium chrysogenum Pc12g05270 I
PDIP_34590 Penicillium digitatum PDIP_34590 I
PEX1_091250 Penicillium expansum PEX1_091250 I
PITC_075220 Penicillium italicum PITC_075220 I
PMAA_096140 Penicillium marneffei PMAA_096140 I
PDE_02360 Penicillium oxalicum PDE_02360 I
PCH_Pc12g05270 Penicillium rubens PCH_Pc12g05270 I
U727_0043108001 Penicillium solitum U727_0043108001 I
MYCFIDRAFT_150925 Pseudocercospora fijiensis MYCFIDRAFT_150925 I
GMDG_00077 Pseudogymnoascus destructans GMDG_00077 I
SS1G_01859 Sclerotinia sclerotiorum SS1G_01859 I
SEPMUDRAFT_123869 Sphaerulina musiva SEPMUDRAFT_123869 I
SPBR_01773 Sporothrix brasiliensis SPBR_01773 I
HMPREF1624_03400 Sporothrix schenckii HMPREF1624_03400 I
S40288_05289 Stachybotrys chartarum S40288_05289 I
S40285_03377 Stachybotrys chlorohalonata S40285_03377 I
PMAA_096140 Talaromyces marneffei PMAA_096140 I
TSTA_045180 Talaromyces stipitatus TSTA_045180 I
THITE_16965 Thielavia terrestris THITE_16965 I
TRIATDRAFT_289913 Trichoderma atroviride TRIATDRAFT_289913 I
TEQG_06211 Trichophyton equinum TEQG_06211 I
H101_04388 Trichophyton interdigitale H101_04388 I
H102_02726 Trichophyton rubrum H102_02726 I
H105_02744 Trichophyton soudanense H105_02744 I
TESG_03699 Trichophyton tonsurans TESG_03699 I
TRV_05271 Trichophyton verrucosum TRV_05271 I
GSTUM_00009411001 Tuber melanosporum GSTUM_00009411001 N
UV8b_756 Ustilaginoidea virens UV8b_756 I
VDAG_06776 Verticillium dahliae VDAG_06776 I
Mycgr3G18493 Zymoseptoria tritici Mycgr3G18493 I