CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Sb08g015555 *(Sorghum bicolor)* MADS box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00319 (SRF-TF)	IPR002100	Sb08g015555	T256090_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
SVP M06984_2.00	Arabidopsis thaliana	DDCCVAAWANGGHAA	TTDCCNTWTTBGGHH	Dap-seq OMalley et al.(2016) SVP_colamp_v3b	0.729	0.729
SVP M06985_2.00	Arabidopsis thaliana	CCMAAWANGGWAANW	WNTTWCCNTWTTKGG	Dap-seq OMalley et al.(2016) SVP_col_v3b	0.729	0.729
SVP M08424_2.00	Arabidopsis thaliana	NWWHCCMAAAADGGAAARHH	DDYTTTCCHTTTTKGGDWWN	ChIP-chip Mathelier et al.(2014) MA0555.1	0.729	0.729
SOC1 M08425_2.00	Arabidopsis thaliana	CCAAAAAWRGAAAND	HNTTTCYWTTTTTGG	ChIP-chip Mathelier et al.(2014) MA0554.1	0.708	0.708
SOC1 M10915_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL20_01	0.708	0.708
MAD55_ORYSJ M10962_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS55_01	0.708	0.708
Q4U0F1_WHEAT M10978_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TAVRT2_01	0.708	0.708
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Sb08g015555.1	MADS box	12	59	RIDNSVSRQVTFSKRRRGLAKKARELAVLCDADVALLIFSDKGTLHHF

Links
Other MADS box family TFs
Other *Sorghum bicolor* TFs