SPAPADRAFT_63759 (Spathaspora passalidarum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 SPAPADRAFT_63759 T256394_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.917 0.917
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.875 0.875
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.875 0.875
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.875 0.875
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.875 0.875
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.875 0.875
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.875 0.875
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.812 0.812
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.812 0.812
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.812 0.812
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.812 0.812
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.812 0.812
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.812 0.812
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.812 0.812
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.812 0.812
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.812 0.812
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.812 0.812
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.812 0.812
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.812 0.812
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.812 0.812
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.812 0.812
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.812 0.812
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.812 0.812
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.812 0.812
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.812 0.812
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.812 0.812
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.812 0.812
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.812 0.812
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.812 0.812
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.771 0.771
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.771 0.771
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EGW30150 MADS box 60 107

Links

Other MADS box family TFs
Other Spathaspora passalidarum TFs

451 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CTHT_0061100 Chaetomium thermophilum CTHT_0061100 N
CFIO01_13191 Colletotrichum fioriniae CFIO01_13191 N
estExt_Genewise1Plus.C_140036 Cryphonectria parasitica estExt_Genewise1Plus.C_140036 N
FFUJ_01368 Fusarium fujikuroi FFUJ_01368 N
FGRRES_01176 Fusarium graminearum FGRRES_01176 N
FOXG_00215 Fusarium oxysporum FOXG_00215 N
FPSE_02607 Fusarium pseudograminearum FPSE_02607 N
NechaG103092 Fusarium solani NechaG103092 N
FVEG_01303 Fusarium verticillioides FVEG_01303 N
GGTG_12840 Gaeumannomyces graminis GGTG_12840 N
CMQ_7830 Grosmannia clavigera CMQ_7830 N
MGG_14728 Magnaporthe oryzae MGG_14728 N
MAPG_00613 Magnaporthe poae MAPG_00613 N
X797_003693 Metarhizium robertsii X797_003693 N
estExt_fgenesh1_pm.C_sca_1_chr1_3_00106 Nectria haematococca estExt_fgenesh1_pm.C_sca_1_chr1_3_00106 N
NCU08594 Neurospora crassa NCU08594 N
estExt_Genewise1Plus.C_40043 Neurospora discreta estExt_Genewise1Plus.C_40043 N
NEUTE1DRAFT_151002 Neurospora tetrasperma NEUTE1DRAFT_151002 N
F503_04484 Ophiostoma piceae uamh F503_04484 N
PFICI_01190 Pestalotiopsis fici PFICI_01190 N
SMAC_04892 Sordaria macrospora SMAC_04892 N
SPBR_06896 Sporothrix brasiliensis SPBR_06896 N
HMPREF1624_07538 Sporothrix schenckii HMPREF1624_07538 N
S40288_08143 Stachybotrys chartarum S40288_08143 N
S40285_00890 Stachybotrys chlorohalonata S40285_00890 N
THITE_2113700 Thielavia terrestris THITE_2113700 N
VHEMI06414 Torrubiella hemipterigena VHEMI06414 N
TRIATDRAFT_128029 Trichoderma atroviride TRIATDRAFT_128029 N
TRIREDRAFT_63532 Trichoderma reesei TRIREDRAFT_63532 N
TRIVIDRAFT_55751 Trichoderma virens TRIVIDRAFT_55751 N
UV8b_4997 Ustilaginoidea virens UV8b_4997 N
VDAG_03306 Verticillium dahliae VDAG_03306 N