CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pm029612 *(Prunus mume)* MADS box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00319 (SRF-TF)	IPR002100	Pm029612	T257092_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AG M02695_2.00	Arabidopsis thaliana	HTTWCCWWAWNDGGHADN	NHTDCCHNWTWWGGWAAD	SELEX Mathelier et al.(2014) MA0005.2	0.792	0.792
AG M10923_2.00	Arabidopsis thaliana	HTTWCCWWAWNDGGHWDN	NHTDCCHNWTWWGGWAAD	Transfac Matys et al.(2006) P$AG_01	0.792	0.792
AG M10924_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AG_02	0.792	0.792
AG M10925_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AG_03	0.792	0.792
AG_TOBAC M10995_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AG1_02	0.792	0.792
AG M10926_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AG_Q2	0.792	0.792
Q08711_PETHY M10999_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP6_01	0.792	0.792
MADS3_ORYSJ M10963_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS3_01	0.792	0.792
AG_PETHY M10994_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS3_02	0.792	0.792
MADS50 M10968_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS50_01	0.792	0.792
AGL15 M06992_2.00	Arabidopsis thaliana	WNTTWCCHAAWDWRGAAAN	NTTTCYWHWTTDGGWAANW	Dap-seq OMalley et al.(2016) AGL15_col_a	0.771	0.771
AGL15 M06993_2.00	Arabidopsis thaliana	DNTTWCCHAAWDDRGAAANHH	DDNTTTCYHHWTTDGGWAANH	Dap-seq OMalley et al.(2016) AGL15_colamp_a	0.771	0.771
AGL16 M06987_2.00	Arabidopsis thaliana	TWCCHAAWDDGGWAA	TTWCCHHWTTDGGWA	Dap-seq OMalley et al.(2016) AGL16_col_a	0.771	0.771
AGL16 M06988_2.00	Arabidopsis thaliana	WDWNTTWCCHWAWWDGGAAAS	STTTCCHWWTWDGGWAANWHW	Dap-seq OMalley et al.(2016) AGL16_colamp_a	0.771	0.771
AGL6 M06986_2.00	Arabidopsis thaliana	TTWCCHAAAAWRGWAANWW	WWNTTWCYWTTTTDGGWAA	Dap-seq OMalley et al.(2016) AGL6_col_a	0.771	0.771
AGL15 M10927_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL15_01	0.771	0.771
AGL15 M10928_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL15_02	0.771	0.771
Q9LEH9_HORVU M10983_2.00	Hordeum vulgare	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BM9_01	0.771	0.771
Q9ATE7_PETHY M11010_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP22_01	0.771	0.771
Q9ATF1_PETHY M11013_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP9_01	0.771	0.771
Q8VWZ3_MALDO M11025_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS14_02	0.771	0.771
Q8VWZ2_MALDO M11024_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS15_02	0.771	0.771
MAD17_ORYSJ M10961_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS17_01	0.771	0.771
Q9ST54_MALDO M11029_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS3_04	0.771	0.771
MADS5 M10970_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS5_02	0.771	0.771
MADS6 M10967_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS6_01	0.771	0.771
O82697_MALDO M11020_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS7_01	0.771	0.771
AGL42 M06995_2.00	Arabidopsis thaliana	RATGATG	CATCATY	Dap-seq OMalley et al.(2016) AGL42_col_a	0.750	0.750
SEP1 M02696_2.00	Arabidopsis thaliana	NDWNCCAWWWWTRGHAWB	VWTDCYAWWWWTGGNWHN	SELEX Mathelier et al.(2014) MA0584.1	0.750	0.750
SEP3 M08143_2.00	Arabidopsis thaliana	CCAAAAAWRGN	NCYWTTTTTGG	ChIP-seq Mathelier et al.(2014) MA0563.1	0.750	0.750
SOC1 M08425_2.00	Arabidopsis thaliana	CCAAAAAWRGAAAND	HNTTTCYWTTTTTGG	ChIP-chip Mathelier et al.(2014) MA0554.1	0.750	0.750
SOC1 M10915_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL20_01	0.750	0.750
SEP1 M10929_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL2_01	0.750	0.750
SEP1 M10930_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL2_02	0.750	0.750
SEP2 M10916_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL4_01	0.750	0.750
SEP3 M10902_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL9_01	0.750	0.750
Q9LEI1_HORVU M10984_2.00	Hordeum vulgare	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BM7_01	0.750	0.750
MLOC_61901 M10964_2.00	Hordeum vulgare	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BM8_01	0.750	0.750
AGL9_PETHY M10993_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP2_01	0.750	0.750
Q9ATE6_PETHY M11009_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP23_01	0.750	0.750
Q9ATE3_PETHY M11008_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP28_01	0.750	0.750
Q9ATF3_PETHY M11015_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP4_01	0.750	0.750
Q9ATF2_PETHY M11014_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP5_01	0.750	0.750
O82698_MALDO M11021_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS10_01	0.750	0.750
O82084_MALDO M11018_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS1_01	0.750	0.750
MADS1 M10969_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS1_02	0.750	0.750
O82699_MALDO M11022_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS11_01	0.750	0.750
Q6UGQ8_PETHY M11005_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS12_01	0.750	0.750
Q9FR84_MAIZE M10981_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS3_03	0.750	0.750
Q9LM09_TOBAC M11016_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS4_01	0.750	0.750
MADS7 M10975_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS7_02	0.750	0.750
MADS8 M10976_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS8_01	0.750	0.750
Q9SBA6_MALDO M11028_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS8_02	0.750	0.750
Q41829_MAIZE M10977_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ZAP1_02	0.750	0.750
AGL1 M02694_2.00	Arabidopsis thaliana	NDTDCCWWWWNDGGWAHN	NDTWCCHNWWWWGGHAHN	SELEX Mathelier et al.(2014) MA0585.1	0.729	0.729
AGL1 M10920_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL1_01	0.729	0.729
AGL1 M10921_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL1_02	0.729	0.729
Q40882_PETHY M11003_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP11_01	0.729	0.729
Q9ATE8_PETHY M11011_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP21_01	0.729	0.729
Q40591_TOBAC M11002_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS1_03	0.729	0.729
Q7X9I6_MALDO M11023_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS12_02	0.729	0.729
MADS15 M10972_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS15_01	0.729	0.729
MADS18 M10973_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS18_01	0.729	0.729
Solyc05g012020.2 M10986_2.00	Solanum lycopersicum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$RIN_01	0.729	0.729
Solyc05g012020.2 M10987_2.00	Solanum lycopersicum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$RIN_Q2_01	0.729	0.729
Solyc05g012020.2 M10988_2.00	Solanum lycopersicum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$RIN_Q2	0.729	0.729
SHP2 M10914_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$SHP2_01	0.729	0.729
SVP M06984_2.00	Arabidopsis thaliana	DDCCVAAWANGGHAA	TTDCCNTWTTBGGHH	Dap-seq OMalley et al.(2016) SVP_colamp_v3b	0.708	0.708
SVP M06985_2.00	Arabidopsis thaliana	CCMAAWANGGWAANW	WNTTWCCNTWTTKGG	Dap-seq OMalley et al.(2016) SVP_col_v3b	0.708	0.708
squamosa M02697_2.00	Antirrhinum majus	MYAWAWAWRGHAAN	NTTDCYWTWTWTRK	SELEX Mathelier et al.(2014) MA0082.1	0.708	0.708
AGL3 M02693_2.00	Arabidopsis thaliana	VDWNCCAWWWWWRGNWNN	NNWNCYWWWWWTGGNWHB	SELEX Mathelier et al.(2014) MA0001.2	0.708	0.708
SVP M08424_2.00	Arabidopsis thaliana	NWWHCCMAAAADGGAAARHH	DDYTTTCCHTTTTKGGDWWN	ChIP-chip Mathelier et al.(2014) MA0555.1	0.708	0.708
AGL3 M10908_2.00	Arabidopsis thaliana	VDWNCCAWWWWWRGNWNN	NNWNCYWWWWWTGGNWHB	Transfac Matys et al.(2006) P$AGL3_01	0.708	0.708
AGL3 M10909_2.00	Arabidopsis thaliana	NDTNCCAWWWWTRGHWNN	NNWDCYAWWWWTGGNAHN	Transfac Matys et al.(2006) P$AGL3_02	0.708	0.708
AGL3 M10910_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL3_03	0.708	0.708
Q9LEI3_HORVU M10985_2.00	Hordeum vulgare	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BM3_01	0.708	0.708
Q43616_PETHY M11004_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP7_01	0.708	0.708
Q38742_ANTMA M11000_2.00	Antirrhinum majus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$SQUA_01	0.708	0.708
For this family, TFs with SR scores > 0.700* will likely have a similar motif*