Cucsa.349650 (Cucumis sativus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cucsa.349650 T257298_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.349650.1 MADS box 28 75

Links

Other MADS box family TFs
Other Cucumis sativus TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla000705 Citrullus lanatus Cla000705 I 0.875
gene24852-v1.0-hybrid Fragaria vesca gene24852-v1.0-hybrid I 0.708
Gorai.011G035500 Gossypium raimondii Gorai.011G035500 I 0.708
LPERR02G00370 Leersia perrieri LPERR02G00370 I 0.708
chr4.CM0046.610.nc Lotus japonicus chr4.CM0046.610.nc I 0.708
MDP0000242009 Malus domestica MDP0000242009 I 0.708
MDP0000250080 Malus domestica MDP0000250080 I 0.708
MDP0000324166 Malus domestica MDP0000324166 I 0.708
Q8VWZ2_MALDO Malus domestica Q8VWZ2_MALDO D 0.708
cassava15798.m1 Manihot esculenta cassava15798.m1 I 0.708
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.733
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.700
OPUNC02G00040 Oryza punctata OPUNC02G00040 I 0.708
POPTR_0004s06310 Populus trichocarpa POPTR_0004s06310 I 0.708
Pm010346 Prunus mume Pm010346 I 0.708
PRUPE_ppa010595mg Prunus persica PRUPE_ppa010595mg I 0.708
SapurV1A.0029s0080 Salix purpurea SapurV1A.0029s0080 I 0.708