estExt_gwp_gw1.C_900087 (Physcomitrella patens)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 estExt_gwp_gw1.C_900087 T257343_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.750 0.750
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.729 0.729
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.729 0.729
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.729 0.729
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.729 0.729
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.729 0.729
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.729 0.729
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.729 0.729
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.729 0.729
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.729 0.729
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.729 0.729
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.729 0.729
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.729 0.729
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.729 0.729
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.729 0.729
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.729 0.729
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.729 0.729
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.708 0.708
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.708 0.708
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.708 0.708
SEP1
M02696_2.00 		Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN		 SELEX
Mathelier et al.(2014)
MA0584.1 		0.708 0.708
SEP3
M08143_2.00 		Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG		 ChIP-seq
Mathelier et al.(2014)
MA0563.1 		0.708 0.708
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.708 0.708
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.708 0.708
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.708 0.708
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.708 0.708
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.708 0.708
SEP1
M10929_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_01 		0.708 0.708
SEP1
M10930_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_02 		0.708 0.708
SEP3
M10902_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL9_01 		0.708 0.708
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.708 0.708
Q9LEH9_HORVU
M10983_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM9_01 		0.708 0.708
AGL9_PETHY
M10993_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP2_01 		0.708 0.708
Q9ATE6_PETHY
M11009_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP23_01 		0.708 0.708
Q9ATF3_PETHY
M11015_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP4_01 		0.708 0.708
Q9ATF2_PETHY
M11014_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP5_01 		0.708 0.708
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.708 0.708
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.708 0.708
O82084_MALDO
M11018_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_01 		0.708 0.708
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.708 0.708
Q6UGQ8_PETHY
M11005_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_01 		0.708 0.708
MADS15
M10972_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_01 		0.708 0.708
MADS18
M10973_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS18_01 		0.708 0.708
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.708 0.708
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.708 0.708
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.708 0.708
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.708 0.708
MADS7
M10975_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_02 		0.708 0.708
MADS8
M10976_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_01 		0.708 0.708
Q9SBA6_MALDO
M11028_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_02 		0.708 0.708
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp_gw1.C_900087 MADS box 10 57

Links

Other MADS box family TFs
Other Physcomitrella patens TFs

923 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_000580 Acremonium chrysogenum ACRE_000580 I 0.000
AB04329.1 Alternaria brassicicola AB04329.1 I 0.000
AOL_s00054g333 Arthrobotrys oligospora AOL_s00054g333 I 0.000
MCYG_00811 Arthroderma otae MCYG_00811 I 0.000
fgenesh1_pm.00866_#_387 Aspergillus carbonarius fgenesh1_pm.00866_#_387 I 0.000
ACLA_038830 Aspergillus clavatus CADACLAG00003443 I 0.000
CADAFLAG00002554 Aspergillus flavus CADAFLAG00002554 I 0.000
AFUA_3G10930 Aspergillus fumigatus CADAFUAG00005490 I 0.000
ANIA_04900 Aspergillus nidulans CADANIAG00005502 I 0.000
CADANGAG00002187 Aspergillus niger CADANGAG00002187 I 0.000
CADAORAG00001246 Aspergillus oryzae CADAORAG00001246 I 0.000
EURHEDRAFT_412951 Aspergillus ruber EURHEDRAFT_412951 I 0.000
ATEG_04617 Aspergillus terreus CADATEAG00008143 I 0.000
M437DRAFT_73685 Aureobasidium melanogenum M437DRAFT_73685 I 0.000
M438DRAFT_217221 Aureobasidium pullulans M438DRAFT_217221 I 0.000
AUEXF2481DRAFT_668051 Aureobasidium subglaciale AUEXF2481DRAFT_668051 I 0.000
BAUCODRAFT_62407 Baudoinia compniacensis BAUCODRAFT_62407 I 0.000
BBA_00899 Beauveria bassiana BBA_00899 I 0.000
COCC4DRAFT_159921 Bipolaris maydis COCC4DRAFT_159921 I 0.000
COCMIDRAFT_84886 Bipolaris oryzae COCMIDRAFT_84886 I 0.000
COCSADRAFT_40030 Bipolaris sorokiniana COCSADRAFT_40030 I 0.000
COCVIDRAFT_34332 Bipolaris victoriae COCVIDRAFT_34332 I 0.000
COCCADRAFT_95285 Bipolaris zeicola COCCADRAFT_95285 I 0.000
BDDG_02837 Blastomyces dermatitidis BDDG_02837 I 0.000
BGHDH14_bgh06173 Blumeria graminis BGHDH14_bgh06173 I 0.000
Bcin10g06020 Botrytis cinerea Bcin10g06020 I 0.000
PVAR5_7790 Byssochlamys spectabilis PVAR5_7790 I 0.000
A1O1_00107 Capronia coronata A1O1_00107 I 0.000
A1O3_02104 Capronia epimyces A1O3_02104 I 0.000
PV04_01966 Capronia semiimmersa PV04_01966 I 0.000
CHGG_03387 Chaetomium globosum CHGG_03387 I 0.000
CTHT_0022340 Chaetomium thermophilum CTHT_0022340 I 0.000
Z519_03446 Cladophialophora bantiana Z519_03446 I 0.000
G647_00147 Cladophialophora carrionii G647_00147 I 0.000
PV07_10701 Cladophialophora immunda PV07_10701 I 0.000
A1O5_04168 Cladophialophora psammophila A1O5_04168 I 0.000
A1O7_00138 Cladophialophora yegresii A1O7_00138 I 0.000
CPUR_05559 Claviceps purpurea CPUR_05559 I 0.000
CIMG_03780 Coccidioides immitis CIMG_03780 I 0.000
CPC735_005330 Coccidioides posadasii CPC735_005330 I 0.000
estExt_fgenesh1_pm.C_10324 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_10324 I 0.000
CFIO01_13451 Colletotrichum fioriniae CFIO01_13451 I 0.000
CGGC5_5611 Colletotrichum gloeosporioides CGGC5_5611 I 0.000
GLRG_03667 Colletotrichum graminicola GLRG_03667 I 0.000
CH063_12375 Colletotrichum higginsianum CH063_12375 I 0.000
Cob_12526 Colletotrichum orbiculare Cob_12526 I 0.000
CSUB01_04147 Colletotrichum sublineola CSUB01_04147 I 0.000
W97_02725 Coniosporium apollinis W97_02725 I 0.000
CCM_02819 Cordyceps militaris CCM_02819 I 0.000
estExt_Genewise1Plus.C_10752 Cryphonectria parasitica estExt_Genewise1Plus.C_10752 I 0.000
HMPREF1541_07740 Cyphellophora europaea HMPREF1541_07740 I 0.000
H072_1712 Dactylellina haptotyla H072_1712 I 0.000
DOTSEDRAFT_68942 Dothistroma septosporum DOTSEDRAFT_68942 I 0.000
DRE_01409 Drechslerella stenobrocha DRE_01409 I 0.000
EPUS_05699 Endocarpon pusillum EPUS_05699 I 0.000
A1O9_06559 Exophiala aquamarina A1O9_06559 I 0.000
HMPREF1120_05672 Exophiala dermatitidis HMPREF1120_05672 I 0.000
PV10_09083 Exophiala mesophila PV10_09083 I 0.000
PV06_04017 Exophiala oligosperma PV06_04017 I 0.000
PV11_07815 Exophiala sideris PV11_07815 I 0.000
PV08_06223 Exophiala spinifera PV08_06223 I 0.000
PV05_10761 Exophiala xenobiotica PV05_10761 I 0.000
Z517_08833 Fonsecaea pedrosoi Z517_08833 I 0.000
FFUJ_03322 Fusarium fujikuroi FFUJ_03322 I 0.000
FGRRES_06664 Fusarium graminearum FGRRES_06664 I 0.000
FOXG_02277 Fusarium oxysporum FOXG_02277 I 0.000
FPSE_01581 Fusarium pseudograminearum FPSE_01581 I 0.000
NechaG60448 Fusarium solani NechaG60448 I 0.000
FVEG_05452 Fusarium verticillioides FVEG_05452 I 0.000
GGTG_09416 Gaeumannomyces graminis GGTG_09416 I 0.000
M7I_7498 Glarea lozoyensis M7I_7498 I 0.000
CMQ_7725 Grosmannia clavigera CMQ_7725 I 0.000
HCBG_03752 Histoplasma capsulatum HCBG_03752 I 0.000
MPH_05512 Macrophomina phaseolina MPH_05512 I 0.000
MGG_05306 Magnaporthe oryzae MGG_05306 I 0.000
MAPG_03349 Magnaporthe poae MAPG_03349 I 0.000
MBM_08838 Marssonina brunnea MBM_08838 I 0.000
MAC_08263 Metarhizium acridum MAC_08263 I 0.000
MAM_02480 Metarhizium album MAM_02480 I 0.000
MANI_019405 Metarhizium anisopliae MANI_019405 I 0.000
MBR_00842 Metarhizium brunneum MBR_00842 I 0.000
MGU_06347 Metarhizium guizhouense MGU_06347 I 0.000
MAJ_06599 Metarhizium majus MAJ_06599 I 0.000
X797_007246 Metarhizium robertsii X797_007246 I 0.000
MCYG_00811 Microsporum canis MCYG_00811 I 0.000
MGYG_01159 Microsporum gypseum MGYG_01159 I 0.000
MYCTH_101394 Myceliophthora thermophila MYCTH_101394 I 0.000
fgenesh1_pg.C_scaffold_1000835 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_1000835 I 0.000
estExt_fgenesh1_pg.C_chr_10720 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_10720 I 0.000
estExt_Genewise1.C_sca_3_chr4_2_01547 Nectria haematococca estExt_Genewise1.C_sca_3_chr4_2_01547 I 0.000
NFIA_066330 Neosartorya fischeri CADNFIAG00005956 I 0.000
NCU00223 Neurospora crassa NCU00223 D 0.000
estExt_fgenesh3_kg.C_50227 Neurospora discreta estExt_fgenesh3_kg.C_50227 I 0.000
NEUTE1DRAFT_100805 Neurospora tetrasperma NEUTE1DRAFT_100805 I 0.000
OIDMADRAFT_111900 Oidiodendron maius OIDMADRAFT_111900 I 0.000
F503_05565 Ophiostoma piceae uamh F503_05565 I 0.000
PABG_02318 Paracoccidioides brasiliensis PABG_02318 I 0.000
PAAG_02067 Paracoccidioides sp lutzii PAAG_02067 I 0.000
Pc18g00880 Penicillium chrysogenum Pc18g00880 I 0.000
PDIP_74650 Penicillium digitatum PDIP_74650 I 0.000
PITC_012820 Penicillium italicum PITC_012820 I 0.000
PMAA_023600 Penicillium marneffei PMAA_023600 I 0.000
PDE_05036 Penicillium oxalicum PDE_05036 I 0.000
PCH_Pc18g00880 Penicillium rubens PCH_Pc18g00880 I 0.000
U727_00433930151 Penicillium solitum U727_00433930151 I 0.000
PFICI_11498 Pestalotiopsis fici PFICI_11498 I 0.000
SNOG_11878 Phaeosphaeria nodorum SNOG_11878 I 0.000
PODANS_7_2810 Podospora anserina PODANS_7_2810 I 0.000
MYCFIDRAFT_184912 Pseudocercospora fijiensis MYCFIDRAFT_184912 I 0.000
GMDG_00332 Pseudogymnoascus destructans GMDG_00332 I 0.000
V499_01554 Pseudogymnoascus pannorum V499_01554 I 0.000
PTT_13034 Pyrenophora teres PTT_13034 I 0.000
PTRG_00227 Pyrenophora triticirepentis PTRG_00227 I 0.000
Z518_07984 Rhinocladiella mackenziei Z518_07984 I 0.000
SAPIO_CDS5801 Scedosporium apiospermum SAPIO_CDS5801 I 0.000
SBOR_2719 Sclerotinia borealis SBOR_2719 I 0.000
SS1G_07344 Sclerotinia sclerotiorum SS1G_07344 I 0.000
SETTUDRAFT_167132 Setosphaeria turcica SETTUDRAFT_167132 I 0.000
SMAC_05297 Sordaria macrospora SMAC_05297 I 0.000
SEPMUDRAFT_145695 Sphaerulina musiva SEPMUDRAFT_145695 I 0.000
SPBR_00455 Sporothrix brasiliensis SPBR_00455 I 0.000
HMPREF1624_06588 Sporothrix schenckii HMPREF1624_06588 I 0.000
S40288_01069 Stachybotrys chartarum S40288_01069 I 0.000
S40285_02045 Stachybotrys chlorohalonata S40285_02045 I 0.000
SNOG_11878 Stagonospora nodorum SNOG_11878 I 0.000
PMAA_023600 Talaromyces marneffei PMAA_023600 I 0.000
TSTA_032010 Talaromyces stipitatus TSTA_032010 I 0.000
THITE_126971 Thielavia terrestris THITE_126971 I 0.000
VHEMI02079 Torrubiella hemipterigena VHEMI02079 I 0.000
TRIATDRAFT_301990 Trichoderma atroviride TRIATDRAFT_301990 I 0.000
TRIREDRAFT_73417 Trichoderma reesei TRIREDRAFT_73417 I 0.000
TRIVIDRAFT_56326 Trichoderma virens TRIVIDRAFT_56326 I 0.000
TEQG_01552 Trichophyton equinum TEQG_01552 I 0.000
H101_07787 Trichophyton interdigitale H101_07787 I 0.000
H102_07752 Trichophyton rubrum H102_07752 I 0.000
H105_07778 Trichophyton soudanense H105_07778 I 0.000
TESG_02451 Trichophyton tonsurans TESG_02451 I 0.000
GSTUM_00003085001 Tuber melanosporum GSTUM_00003085001 I 0.000
UREG_07503 Uncinocarpus reesii UREG_07503 I 0.000
UV8b_2805 Ustilaginoidea virens UV8b_2805 I 0.000
PV09_02747 Verruconis gallopava PV09_02747 I 0.000
VDBG_08802 Verticillium albo atrum VDBG_08802 I 0.000
VDBG_08802 Verticillium alfalfae VDBG_08802 I 0.000
VDAG_06460 Verticillium dahliae VDAG_06460 I 0.000
Mycgr3G107152 Zymoseptoria tritici Mycgr3G107152 I 0.000