Cagra.1216s0008 (Capsella grandiflora)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cagra.1216s0008 T257678_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL55
M06983_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
AGL55_col_a 		0.721 0.721
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1216s0008.1.p MADS box 12 60

Links

Other MADS box family TFs
Other Capsella grandiflora TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.10040s0123 Boechera stricta Bostr.10040s0123 I 0.721
Bo9g043530 Brassica oleracea Bo9g043530 I 0.767
Bra040965 Brassica rapa Bra040965 I 0.767
Carubv10021738m.g Capsella rubella Carubv10021738m.g I 1.000