Carubv10003161m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10003161m.g T257735_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003161m MADS box 8 50

Links

Other MADS box family TFs
Other Capsella rubella TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32835 Aegilops tauschii F775_32835 N
F775_13620 Aegilops tauschii F775_13620 I
AMTR_s00065p00092420 Amborella trichopoda AMTR_s00065p00092420 N
Aquca_037_00140 Aquilegia coerulea Aquca_037_00140 N
Aquca_013_00537 Aquilegia coerulea Aquca_013_00537 I
Aquca_006_00049 Aquilegia coerulea Aquca_006_00049 N
AtGRF5 Arabidopsis lyrata fgenesh2_kg.3__1504__AT3G13960.1 I
GRF5 Arabidopsis thaliana AT3G13960 I
Bostr.28625s0309 Boechera stricta Bostr.28625s0309 I
BRADI3G51685 Brachypodium distachyon BRADI3G51685 N
BRADI2G14320 Brachypodium distachyon BRADI2G14320 N
BRADI1G12650 Brachypodium distachyon BRADI1G12650 N
Bo4g122960 Brassica oleracea Bo4g122960 N
PK18842.1 Cannabis sativa PK18842.1 N
Cagra.0736s0034 Capsella grandiflora Cagra.0736s0034 I
Carubv10013860m.g Capsella rubella Carubv10013860m.g I
Cla022992 Citrullus lanatus Cla022992 N
Ciclev10019828m.g Citrus clementina Ciclev10019828m.g N
orange1.1g010979m.g Citrus sinensis orange1.1g010979m.g N
Cucsa.395430 Cucumis sativus Cucsa.395430 N
Eucgr.F00097 Eucalyptus grandis Eucgr.F00097 N
Thhalv10020873m.g Eutrema salsugineum Thhalv10020873m.g I
gene13517-v1.0-hybrid Fragaria vesca gene13517-v1.0-hybrid I
GLYMA10G07790 Glycine max GLYMA10G07790 N
Gorai.009G222200 Gossypium raimondii Gorai.009G222200 N
Gorai.005G098700 Gossypium raimondii Gorai.005G098700 N
Gorai.004G204600 Gossypium raimondii Gorai.004G204600 I
Gorai.009G277500 Gossypium raimondii Gorai.009G277500 N
Gorai.010G027700 Gossypium raimondii Gorai.010G027700 N
MLOC_64055 Hordeum vulgare MLOC_64055 I
MLOC_80060 Hordeum vulgare MLOC_80060 N
LPERR06G06090 Leersia perrieri LPERR06G06090 I
LjSGA_066892.1 Lotus japonicus LjSGA_066892.1 N
cassava22415.valid.m1 Manihot esculenta cassava22415.valid.m1 N
MTR_8g035640 Medicago truncatula MTR_8g035640 N
mgf026507m Mimulus guttatus mgf026507m I
mgf005583m Mimulus guttatus mgf005583m I
mgf002023m Mimulus guttatus mgf002023m I
GSMUA_Achr10G06370_001 Musa acuminata GSMUA_Achr10G06370_001 I
GSMUA_Achr2G04650_001 Musa acuminata GSMUA_Achr2G04650_001 I
GSMUA_Achr6G01270_001 Musa acuminata GSMUA_Achr6G01270_001 I
GSMUA_Achr8G30640_001 Musa acuminata GSMUA_Achr8G30640_001 I
ORGLA06G0059900 Oryza glaberrima ORGLA06G0059900 I
OGLUM06G07010 Oryza glumaepatula OGLUM06G07010 I
BGIOSGA022506 Oryza indica BGIOSGA022506 I
OMERI06G07610 Oryza meridionalis OMERI06G07610 I
OPUNC06G06310 Oryza punctata OPUNC06G06310 I
ORUFI06G06870 Oryza rufipogon ORUFI06G06870 I
GRF2 Oryza sativa OS06G0204800 I
POPTR_0014s01320 Populus trichocarpa POPTR_0014s01320 N
POPTR_0007s14720 Populus trichocarpa POPTR_0007s14720 N
POPTR_0002s11590 Populus trichocarpa POPTR_0002s11590 N
Pm023072 Prunus mume Pm023072 I
PRUPE_ppa011917mg Prunus persica PRUPE_ppa011917mg I
28976.m000158 Ricinus communis 28976.m000158 N
SapurV1A.0177s0310 Salix purpurea SapurV1A.0177s0310 I
SapurV1A.0608s0150 Salix purpurea SapurV1A.0608s0150 N
Solyc04g077510.2 Solanum lycopersicum Solyc04g077510.2 N
Solyc08g005430.2 Solanum lycopersicum Solyc08g005430.2 I
Solyc10g083510.1 Solanum lycopersicum Solyc10g083510.1 N
Solyc02g092070.2 Solanum lycopersicum Solyc02g092070.2 N
PGSC0003DMG400004942 Solanum tuberosum PGSC0003DMG400004942 N
PGSC0003DMG400018491 Solanum tuberosum PGSC0003DMG400018491 I
PGSC0003DMG400021403 Solanum tuberosum PGSC0003DMG400021403 N
PGSC0003DMG400028259 Solanum tuberosum PGSC0003DMG400028259 N
TCM_034655 Theobroma cacao TCM_034655 N
Traes_4BS_AAE1439D4 Triticum aestivum Traes_4BS_AAE1439D4 N
Traes_4AL_A8CBB811B Triticum aestivum Traes_4AL_A8CBB811B N
Traes_4DS_261E93270 Triticum aestivum Traes_4DS_261E93270 N
Traes_6BL_7462E6F9B Triticum aestivum Traes_6BL_7462E6F9B I
TRIUR3_30418 Triticum urartu TRIUR3_30418 I
TRIUR3_34986 Triticum urartu TRIUR3_34986 N
VIT_08s0007g03760 Vitis vinifera VIT_08s0007g03760 N
VIT_18s0001g08650 Vitis vinifera VIT_18s0001g08650 N
AtGRF7 Vitis vinifera VIT_16s0098g01080 N
GRMZM5G893117 Zea mays GRMZM5G893117 I