Eucgr.K00197 (Eucalyptus grandis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Eucgr.K00197 T258004_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.833 0.833
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.833 0.833
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.833 0.833
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.812 0.812
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.812 0.812
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.792 0.792
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.792 0.792
AGL13
M06989_2.00 		Arabidopsis thaliana
WTWCYHAAAAWRGWAADW
WHTTWCYWTTTTDRGWAW		 Dap-seq
OMalley et al.(2016)
AGL13_col_b 		0.771 0.771
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.771 0.771
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.771 0.771
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.771 0.771
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.771 0.771
MADS5
M10970_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_02 		0.771 0.771
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.771 0.771
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.750 0.750
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.750 0.750
SEP1
M02696_2.00 		Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN		 SELEX
Mathelier et al.(2014)
MA0584.1 		0.750 0.750
SEP3
M08143_2.00 		Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG		 ChIP-seq
Mathelier et al.(2014)
MA0563.1 		0.750 0.750
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.750 0.750
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.750 0.750
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.750 0.750
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.750 0.750
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.750 0.750
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.750 0.750
SEP1
M10929_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_01 		0.750 0.750
SEP1
M10930_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_02 		0.750 0.750
SEP3
M10902_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL9_01 		0.750 0.750
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.750 0.750
Q9LEI1_HORVU
M10984_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM7_01 		0.750 0.750
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.750 0.750
AGL9_PETHY
M10993_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP2_01 		0.750 0.750
Q9ATE6_PETHY
M11009_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP23_01 		0.750 0.750
Q9ATF3_PETHY
M11015_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP4_01 		0.750 0.750
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.750 0.750
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.750 0.750
O82084_MALDO
M11018_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_01 		0.750 0.750
MADS1
M10969_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_02 		0.750 0.750
Q6UGQ8_PETHY
M11005_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_01 		0.750 0.750
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.750 0.750
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.750 0.750
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.750 0.750
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.750 0.750
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.750 0.750
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.750 0.750
MADS7
M10975_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_02 		0.750 0.750
MADS8
M10976_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_01 		0.750 0.750
Q9SBA6_MALDO
M11028_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_02 		0.750 0.750
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.750 0.750
Q84LI3_WHEAT
M10979_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT1_01 		0.750 0.750
O82128_WHEAT
M10965_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WAP1_01 		0.750 0.750
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.729 0.729
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.729 0.729
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.729 0.729
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.729 0.729
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.729 0.729
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.729 0.729
SEP2
M10916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL4_01 		0.729 0.729
Q9LEH9_HORVU
M10983_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM9_01 		0.729 0.729
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.729 0.729
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.729 0.729
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.729 0.729
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.729 0.729
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
AGL3
M02693_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 SELEX
Mathelier et al.(2014)
MA0001.2 		0.708 0.708
AGL3
M10908_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 Transfac
Matys et al.(2006)
P$AGL3_01 		0.708 0.708
AGL3
M10909_2.00 		Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN		 Transfac
Matys et al.(2006)
P$AGL3_02 		0.708 0.708
AGL3
M10910_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL3_03 		0.708 0.708
Q9LEI3_HORVU
M10985_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM3_01 		0.708 0.708
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.708 0.708
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.708 0.708
Q9ATF2_PETHY
M11014_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP5_01 		0.708 0.708
MADS15
M10972_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_01 		0.708 0.708
MADS18
M10973_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS18_01 		0.708 0.708
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.708 0.708
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.708 0.708
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.708 0.708
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.K00197.1 MADS box 10 57

Links

Other MADS box family TFs
Other Eucalyptus grandis TFs

1231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000015013 Ailuropoda melanoleuca ENSAMEG00000015013 I
ENSAMEG00000019633 Ailuropoda melanoleuca ENSAMEG00000019633 I
Alligator_sinensis_CCG012594.1 Alligator sinensis Alligator_sinensis_CCG012594.1 I
ENSAPLG00000002295 Anas platyrhynchos ENSAPLG00000002295 I
Afo_R014889 Aptenodytes forsteri Afo_R014889 I
ENSAMXG00000026066 Astyanax mexicanus ENSAMXG00000026066 I
ENSAMXG00000026284 Astyanax mexicanus ENSAMXG00000026284 I
BGLB010755 Biomphalaria glabrata BGLB010755 I
ENSBTAP00000021340-D1 Bos grunniens ENSBTAP00000021340-D1 I
ENSP00000356708-D1 Bos grunniens ENSP00000356708-D1 I
OLIG3 Bos taurus ENSBTAG00000008749 I
Brh_R007937 Buceros rhinoceros Brh_R007937 I
OLIG2 Callithrix jacchus ENSCJAG00000009439 I
Aan_R009789 Calypte anna Aan_R009789 I
OLIG3 Canis familiaris ENSCAFG00000000265 I
OLIG2 Canis familiaris ENSCAFG00000028529 I
CapteG41307 Capitella teleta CapteG41307 I
CapteG65387 Capitella teleta CapteG65387 I
OLIG3 Cavia porcellus ENSCPOG00000007516 I
OLIG2 Cavia porcellus ENSCPOG00000011590 I
Cmyd_10005462 Chelonia mydas Cmyd_10005462 I
Cmyd_10011949 Chelonia mydas Cmyd_10011949 I
ENSCSAG00000000185 Chlorocebus sabaeus ENSCSAG00000000185 I
ENSCSAG00000018687 Chlorocebus sabaeus ENSCSAG00000018687 I
OLIG3 Choloepus hoffmanni ENSCHOG00000005165 I
CGI_10019998 Crassostrea gigas CGI_10019998 I
CGI_10023146 Crassostrea gigas CGI_10023146 I
olig2 Danio rerio ENSDARG00000040946 I
OLIG3 Dasypus novemcinctus ENSDNOG00000042405 I
OLIG2 Dasypus novemcinctus ENSDNOG00000047420 I
ENSDORG00000006743 Dipodomys ordii ENSDORG00000006743 I
Olig3 Dipodomys ordii ENSDORG00000013033 I
OLIG3 Echinops telfairi ENSETEG00000004562 I
ECPE_0001595001 Echinostoma caproni ECPE_0001595001 I
D915_09810 Fasciola hepatica D915_09810 I
OLIG3 Felis catus ENSFCAG00000030246 I
ENSFALG00000012862 Ficedula albicollis ENSFALG00000012862 I
ENSGMOG00000018006 Gadus morhua ENSGMOG00000018006 I
ENSGMOG00000018584 Gadus morhua ENSGMOG00000018584 I
OLIG3 Gallus gallus ENSGALG00000013862 I
ENSGALG00000027381 Gallus gallus ENSGALG00000027381 I
olig2 Gasterosteus aculeatus ENSGACG00000002152 I
OLIG3 Gasterosteus aculeatus ENSGACG00000010412 I
Gfo_R003786 Geospiza fortis Gfo_R003786 I
OLIG3 Gorilla gorilla ENSGGOG00000001516 I
OLIG2 Gorilla gorilla ENSGGOG00000008780 I
OLIG3 Homo sapiens ENSG00000177468 D
OLIG2 Homo sapiens ENSG00000205927 D
ENSSTOG00000020214 Ictidomys tridecemlineatus ENSSTOG00000020214 I
ENSSTOG00000020899 Ictidomys tridecemlineatus ENSSTOG00000020899 I
ENSLACG00000005047 Latimeria chalumnae ENSLACG00000005047 I
ENSLACG00000005481 Latimeria chalumnae ENSLACG00000005481 I
ENSLOCG00000017350 Lepisosteus oculatus ENSLOCG00000017350 I
ENSLOCG00000017506 Lepisosteus oculatus ENSLOCG00000017506 I
LotgiG70673 Lottia gigantea LotgiG70673 I
OLIG3 Loxodonta africana ENSLAFG00000005655 I
OLIG2 Loxodonta africana ENSLAFG00000028347 I
ENSP00000356708 Macaca fascicularis ENSP00000356708 I
OLIG2 Macaca mulatta ENSMMUG00000017652 I
ENSMMUG00000029441 Macaca mulatta ENSMMUG00000029441 I
ENSMEUG00000002914 Macropus eugenii ENSMEUG00000002914 I
ENSMICG00000004313 Microcebus murinus ENSMICG00000004313 I
OLIG3 Monodelphis domestica ENSMODG00000017418 I
OLIG2 Monodelphis domestica ENSMODG00000025338 I
ENSMPUG00000001227 Mustela putorius furo ENSMPUG00000001227 I
Olig2 Mus musculus ENSMUSG00000039830 D
Olig3 Mus musculus ENSMUSG00000045591 D
Myotis_brandtii_OLIG3_10035715 Myotis brandtii Myotis_brandtii_OLIG3_10035715 I
OLIG3 Myotis lucifugus ENSMLUG00000026705 I
ENSNLEG00000019305 Nomascus leucogenys ENSNLEG00000019305 I
OLIG3 Ochotona princeps ENSOPRG00000003267 I
Ocbimv22001042m.g Octopus bimaculoides Ocbimv22001042m.g I
Ogr17936 Ophisaurus gracilis Ogr17936 I
ENSONIG00000017079 Oreochromis niloticus ENSONIG00000017079 I
ENSONIG00000020727 Oreochromis niloticus ENSONIG00000020727 I
OLIG3 Ornithorhynchus anatinus ENSOANG00000014796 I
OLIG3 Oryctolagus cuniculus ENSOCUG00000017289 I
olig2 Oryzias latipes ENSORLG00000010211 I
OLIG3 Otolemur garnettii ENSOGAG00000011977 I
OLIG2 Otolemur garnettii ENSOGAG00000026818 I
ENSOARG00000002572 Ovis aries ENSOARG00000002572 I
OLIG2 Pan troglodytes ENSPTRG00000013863 I
OLIG3 Pan troglodytes ENSPTRG00000018643 I
ENSPANG00000006465 Papio anubis ENSPANG00000006465 I
ENSPANG00000007664 Papio anubis ENSPANG00000007664 I
ENSPSIG00000001778 Pelodiscus sinensis ENSPSIG00000001778 I
ENSPSIG00000001988 Pelodiscus sinensis ENSPSIG00000001988 I
ENSPFOG00000004604 Poecilia formosa ENSPFOG00000004604 I
ENSPFOG00000015805 Poecilia formosa ENSPFOG00000015805 I
ENSPFOG00000019968 Poecilia formosa ENSPFOG00000019968 I
Pvit_10685 Pogona vitticeps Pvit_10685 I
Pvit_17282 Pogona vitticeps Pvit_17282 I
ENSPPYG00000011369 Pongo abelii ENSPPYG00000011369 I
ENSPPYG00000017041 Pongo abelii ENSPPYG00000017041 I
OLIG3 Procavia capensis ENSPCAG00000002488 I
OLIG2 Procavia capensis ENSPCAG00000005657 I
Olig3 Rattus norvegicus ENSRNOG00000012057 I
Olig2 Rattus norvegicus ENSRNOG00000028658 I
Sakowv30018772m.g Saccoglossus kowalevskii Sakowv30018772m.g I
ENSSHAG00000007183 Sarcophilus harrisii ENSSHAG00000007183 I
OLIG3 Sus scrofa ENSSSCG00000004155 I
OLIG3 Taeniopygia guttata ENSTGUG00000010892 I
olig2 Takifugu rubripes ENSTRUG00000014944 I
olig2 Tetraodon nigroviridis ENSTNIG00000000234 I
olig2 Tetraodon nigroviridis ENSTNIG00000003641 I
OLIG3 Tetraodon nigroviridis ENSTNIG00000017004 I
OLIG3 Tupaia belangeri ENSTBEG00000014468 I
olig3 Xenopus tropicalis XB-GENE-919789 I
XP_002938491 Xenopus tropicalis XP_002938491 I
ENSXMAG00000001116 Xiphophorus maculatus ENSXMAG00000001116 I
ENSXMAG00000018245 Xiphophorus maculatus ENSXMAG00000018245 I