CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
evm.TU.contig_35762
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.contig_35762
T258091_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.TU.contig_35762.1
MADS box
10
55
YVTNDSARKATLKKKKGLMKKVSELSTLCDVKAYAIMYNPYDSKLE
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBG01244
Caenorhabditis briggsae
CBG01244
N
CBG01247
Caenorhabditis briggsae
CBG01247
N
CBG01248
Caenorhabditis briggsae
CBG01248
I
CBG01250
Caenorhabditis briggsae
CBG01250
D
CBG26975
Caenorhabditis briggsae
CBG26975
N
nhr-56
Caenorhabditis elegans
WBGene00003646
N
nhr-184
Caenorhabditis elegans
WBGene00018415
I
CJA16882
Caenorhabditis japonica
CJA16882
I
CRE08754
Caenorhabditis remanei
CRE08754
I
CRE08760
Caenorhabditis remanei
CRE08760
I