MDP0000152718 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000152718 T258661_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000152718 MADS box 10 55

Links

Other MADS box family TFs
Other Malus domestica TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.727
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.711
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.704
MDP0000123878 Malus domestica MDP0000123878 I 0.852
MDP0000159587 Malus domestica MDP0000159587 I 1.000
MDP0000726295 Malus domestica MDP0000726295 I 0.852