Thhalv10024119m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10024119m.g T259186_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.917 0.917
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10024119m MADS box 10 58

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32365 Aegilops tauschii F775_32365 N
BRADI3G40280 Brachypodium distachyon BRADI3G40280 N
MLOC_53939 Hordeum vulgare MLOC_53939 N
LPERR08G17220 Leersia perrieri LPERR08G17220 N
OBART08G20380 Oryza barthii OBART08G20380 N
OB08G27280 Oryza brachyantha OB08G27280 N
ORGLA08G0180600 Oryza glaberrima ORGLA08G0180600 N
OGLUM08G21650 Oryza glumaepatula OGLUM08G21650 N
OLONG_027098 Oryza longistaminata OLONG_027098 N
OMERI02G02200 Oryza meridionalis OMERI02G02200 N
OPUNC08G18550 Oryza punctata OPUNC08G18550 N
ORUFI08G22870 Oryza rufipogon ORUFI08G22870 N
OS08G0515800 Oryza sativa OS08G0515800 N
Pavir.Fa00462 Panicum virgatum Pavir.Fa00462 N
Pavir.Fb01913 Panicum virgatum Pavir.Fb01913 N
Si001226m.g Setaria italica Si001226m.g N
Si014054m.g Setaria italica Si014054m.g N
Sb07g027350 Sorghum bicolor Sb07g027350 N
Traes_7AS_3BAA88E9E Triticum aestivum Traes_7AS_3BAA88E9E N
Traes_7DS_64B00DC40 Triticum aestivum Traes_7DS_64B00DC40 N
TRIUR3_01970 Triticum urartu TRIUR3_01970 N
GRMZM2G113181 Zea mays GRMZM2G113181 N