PredSwiss_CON2646.1 (Pneumocystis carinii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 PredSwiss_CON2646.1 T259269_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.917 0.917
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.896 0.896
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.896 0.896
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.896 0.896
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.896 0.896
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.896 0.896
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.896 0.896
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.812 0.812
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.812 0.812
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.812 0.812
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.812 0.812
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.812 0.812
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.812 0.812
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.812 0.812
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.812 0.812
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.812 0.812
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.812 0.812
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.812 0.812
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.812 0.812
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.812 0.812
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.812 0.812
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.812 0.812
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.812 0.812
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.812 0.812
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.812 0.812
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.812 0.812
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.812 0.812
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.812 0.812
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.812 0.812
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.771 0.771
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.771 0.771
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.729 0.729
ARG80
M08426_2.00 		Saccharomyces cerevisiae
WGACDC
GHGTCW		 ChIP-chip
Mathelier et al.(2014)
MA0271.1 		0.708 0.708
ARG80
M08588_2.00 		Saccharomyces cerevisiae
NNDVCBNVBDNGRHAR
YTDYCNHVBNVGBHNN		 Misc
DeBoer et al.(2011)
YMR042W_1483 		0.708 0.708
ARG80
M10989_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ARGRI_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PredSwiss_CON2646.1 MADS box 45 92

Links

Other MADS box family TFs
Other Pneumocystis carinii TFs

478 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000008058 Ailuropoda melanoleuca ENSAMEG00000008058 I 0.000
Alligator_sinensis_CCG019297.1 Alligator sinensis Alligator_sinensis_CCG019297.1 I 0.000
IKZF2 Anolis carolinensis ENSACAG00000025864 I 0.000
IKZF3 Anolis carolinensis ENSACAG00000003308 I 0.000
Afo_R007273 Aptenodytes forsteri Afo_R007273 I 0.000
ENSAMXG00000001814 Astyanax mexicanus ENSAMXG00000001814 I 0.000
ENSP00000342876-D1 Bos grunniens ENSP00000342876-D1 I 0.000
Brh_R001017 Buceros rhinoceros Brh_R001017 I 0.000
Brh_R006187 Buceros rhinoceros Brh_R006187 I 0.000
IKZF3 Callithrix jacchus ENSCJAG00000008957 I 0.000
IKZF1 Callithrix jacchus ENSCJAG00000010988 I 0.000
IKZF2 Callithrix jacchus ENSCJAG00000011409 I 0.000
Aan_R015421 Calypte anna Aan_R015421 I 0.000
IKZF2 Canis familiaris ENSCAFG00000014224 I 0.000
IKZF2 Cavia porcellus ENSCPOG00000013506 I 0.000
Cmyd_10012463 Chelonia mydas Cmyd_10012463 I 0.000
Cmyd_10006949 Chelonia mydas Cmyd_10006949 I 0.000
ENSCSAG00000009405 Chlorocebus sabaeus ENSCSAG00000009405 N 0.000
ikzf1 Danio rerio ENSDARG00000013539 I 0.000
ENSDORG00000010394 Dipodomys ordii ENSDORG00000010394 N 0.000
Ikzf2 Dipodomys ordii ENSDORG00000007539 I 0.000
ENSDORG00000002620 Dipodomys ordii ENSDORG00000002620 N 0.000
IKZF3 Echinops telfairi ENSETEG00000005889 I 0.000
IKZF1 Echinops telfairi ENSETEG00000011408 N 0.000
IKZF2 Echinops telfairi ENSETEG00000019814 I 0.000
IKZF2 Equus caballus ENSECAG00000000040 N 0.000
IKZF2 Erinaceus europaeus ENSEEUG00000001089 I 0.000
IKZF2 Felis catus ENSFCAG00000009654 I 0.000
ENSFALG00000012948 Ficedula albicollis ENSFALG00000012948 I 0.000
ENSGMOG00000012959 Gadus morhua ENSGMOG00000012959 I 0.000
IKZF2 Gallus gallus ENSGALG00000003136 I 0.000
IKZF3 Gasterosteus aculeatus ENSGACG00000018123 I 0.000
ikzf1 Gasterosteus aculeatus ENSGACG00000003033 I 0.000
Gfo_R012078 Geospiza fortis Gfo_R012078 I 0.000
IKZF2 Gorilla gorilla ENSGGOG00000011301 I 0.000
IKZF1 Homo sapiens ENSG00000185811 D 0.000
IKZF3 Homo sapiens ENSG00000161405 D 0.000
IKZF2 Homo sapiens ENSG00000030419 D 0.000
ENSSTOG00000011683 Ictidomys tridecemlineatus ENSSTOG00000011683 I 0.000
ENSLACG00000011419 Latimeria chalumnae ENSLACG00000011419 I 0.000
ENSLOCG00000013557 Lepisosteus oculatus ENSLOCG00000013557 I 0.000
IKZF2 Loxodonta africana ENSLAFG00000008236 I 0.000
ENSP00000342876 Macaca fascicularis ENSP00000342876 I 0.000
IKZF2 Macaca mulatta ENSMMUG00000000381 I 0.000
IKZF1 Macaca mulatta ENSMMUG00000000504 I 0.000
IKZF3 Macaca mulatta ENSMMUG00000017337 I 0.000
ENSMEUG00000014645 Macropus eugenii ENSMEUG00000014645 N 0.000
ENSMEUG00000000683 Macropus eugenii ENSMEUG00000000683 I 0.000
ENSMGAG00000003697 Meleagris gallopavo ENSMGAG00000003697 I 0.000
IKZF2 Microcebus murinus ENSMICG00000013862 I 0.000
ENSMICG00000002334 Microcebus murinus ENSMICG00000002334 N 0.000
IKZF2 Monodelphis domestica ENSMODG00000015683 N 0.000
Ikzf2 Mus musculus ENSMUSG00000025997 I 0.000
Ikzf1 Mus musculus ENSMUSG00000018654 D 0.000
Myotis_brandtii_IKZF2_10022929 Myotis brandtii Myotis_brandtii_IKZF2_10022929 N 0.000
IKZF2 Myotis lucifugus ENSMLUG00000012494 I 0.000
ENSNLEG00000007199 Nomascus leucogenys ENSNLEG00000007199 I 0.000
ENSONIG00000009010 Oreochromis niloticus ENSONIG00000009010 I 0.000
IKZF2 Oryctolagus cuniculus ENSOCUG00000007309 I 0.000
ikzf1 Oryzias latipes ENSORLG00000020562 N 0.000
IKZF2 Otolemur garnettii ENSOGAG00000016680 I 0.000
ENSOARG00000019252 Ovis aries ENSOARG00000019252 I 0.000
IKZF2 Pan troglodytes ENSPTRG00000012884 I 0.000
ENSPANG00000016694 Papio anubis ENSPANG00000016694 I 0.000
ENSPSIG00000016492 Pelodiscus sinensis ENSPSIG00000016492 I 0.000
ENSPSIG00000014940 Pelodiscus sinensis ENSPSIG00000014940 I 0.000
ENSPMAG00000001307 Petromyzon marinus ENSPMAG00000001307 I 0.000
ENSPFOG00000002235 Poecilia formosa ENSPFOG00000002235 I 0.000
ENSPFOG00000013073 Poecilia formosa ENSPFOG00000013073 I 0.000
ENSPFOG00000013807 Poecilia formosa ENSPFOG00000013807 I 0.000
Pvit_13083 Pogona vitticeps Pvit_13083 I 0.000
Pvit_07651 Pogona vitticeps Pvit_07651 I 0.000
ENSPPYG00000013139 Pongo abelii ENSPPYG00000013139 I 0.000
IKZF2 Pteropus vampyrus ENSPVAG00000014197 I 0.000
Ikzf2 Rattus norvegicus ENSRNOG00000027430 I 0.000
Ikzf1 Rattus norvegicus ENSRNOG00000004444 I 0.000
IKZF1 Sorex araneus ENSSARG00000012665 N 0.000
IKZF2 Sorex araneus ENSSARG00000012607 N 0.000
IKZF2 Sus scrofa ENSSSCG00000016164 I 0.000
IKZF2 Taeniopygia guttata ENSTGUG00000002874 I 0.000
ikzf1 Takifugu rubripes ENSTRUG00000017779 I 0.000
IKZF3 Takifugu rubripes ENSTRUG00000005964 I 0.000
ENSTSYG00000007372 Tarsius syrichta ENSTSYG00000007372 N 0.000
ENSTSYG00000006472 Tarsius syrichta ENSTSYG00000006472 I 0.000
ENSTNIG00000014148 Tetraodon nigroviridis ENSTNIG00000014148 I 0.000
ikzf1 Tetraodon nigroviridis ENSTNIG00000004159 I 0.000
IKZF2 Tupaia belangeri ENSTBEG00000010122 I 0.000
IKZF1 Tupaia belangeri ENSTBEG00000004896 I 0.000
Tal_R002368 Tyto alba Tal_R002368 I 0.000
IKZF2 Vicugna pacos ENSVPAG00000004262 I 0.000
ikzf3.L Xenopus laevis XB-GENE-994463 I 0.000
ikzf2.S Xenopus laevis XB-GENE-17346220 I 0.000
XP_002940416 Xenopus tropicalis XP_002940416 I 0.000
ikzf1 Xenopus tropicalis XB-GENE-876522 N 0.000
ikzf2 Xenopus tropicalis XB-GENE-1013632 I 0.000
ENSXMAG00000018173 Xiphophorus maculatus ENSXMAG00000018173 I 0.000
ENSXMAG00000008077 Xiphophorus maculatus ENSXMAG00000008077 I 0.000