CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

mef2a.L *(Xenopus laevis)* MADS box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00319 (SRF-TF)	IPR002100	XB-GENE-487398	T259291_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MEF2A M03340_2.00	Homo sapiens	KCTAWAAATAGM	KCTATTTWTAGM	SELEX Jolma et al.(2013) MEF2A_1	1.000	1.000
MEF2A M07979_2.00	Homo sapiens	NDDHYAAAAATARHH	DDYTATTTTTRDHHN	ChIP-seq Gerstein et al.(2012) GM12878_MEF2A_HudsonAlpha	1.000	1.000
MEF2A M08212_2.00	Homo sapiens	CTAWWWWTAG	CTAWWWWTAG	ChIP-seq Contrino et al.(2012) Mv88	0.958	0.958
MEF2A M08213_2.00	Homo sapiens	AAAATAGM	KCTATTTT	ChIP-seq Contrino et al.(2012) Mv90	0.958	0.958
MEF2A M09247_2.00	Homo sapiens	DYYAAAAATAGMH	DKCTATTTTTRRH	Misc Kulakovskiy et al.(2013) MEF2A_HUMAN.H11MO.0.A	1.000	1.000
Mef2a M09255_2.00	Mus musculus	DDCYAWAAATARMH	DKYTATTTWTRGHH	Misc Kulakovskiy et al.(2013) MEF2A_MOUSE.H11MO.0.A	1.000	1.000
Mef2a M09599_2.00	Mus musculus	CYNDAAATAG	CTATTTHNRG	Misc Heinz et al.(2010) HL1-Mef2a.biotin_GSE21529	0.958	0.958
MEF2A M10933_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AMEF2_Q6	0.958	0.958
MEF2A M10934_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMEF2_Q6	0.958	0.958
MEF2A M10935_2.00	Homo sapiens	BTCTAAAAATAACYCY	RGRGTTATTTTTAGAV	Transfac Matys et al.(2006) V$MEF2_01	0.958	0.958
MEF2A M10936_2.00	Homo sapiens	BNNNDDDCTAWAAATAGMHNNN	NNNDKCTATTTWTAGHHHNNNV	Transfac Matys et al.(2006) V$MEF2_02	0.958	0.958
MEF2A M10937_2.00	Homo sapiens	NNNNDWKCTAWAAATAGMHHNN	NNDDKCTATTTWTAGMWHNNNN	Transfac Matys et al.(2006) V$MEF2_03	0.958	0.958
MEF2A M10938_2.00	Homo sapiens	NVTGTTRCTAWAAATAGAAHHN	NDDWTCTATTTWTAGYAACABN	Transfac Matys et al.(2006) V$MEF2_04	1.000	1.000
MEF2A M10939_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2A_05	1.000	1.000
MEF2A M10940_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2A_Q6	0.958	0.958
MEF2A M10941_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2_Q6_02	0.958	0.958
MEF2A M10942_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MMEF2_Q6	0.958	0.958
MEF2A M10943_2.00	Homo sapiens	NDKCTAWAAATAGMHH	DDKCTATTTWTAGMHN	Transfac Matys et al.(2006) V$RSRFC4_01	1.000	1.000
MEF2A M10944_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RSRFC4_Q2	1.000	1.000
MEF2C M02745_2.00	Homo sapiens	TWCTAWAAATAG	CTATTTWTAGWA	SELEX Jolma et al.(2010) MEF2C_dimer	0.938	0.938
MEF2C M05551_2.00	Homo sapiens	CYWWATWWGG	CCWWATWWRG	SELEX Yin et al.(2017) MEF2C_FL_HT-SELEX	0.938	0.938
MEF2C M08149_2.00	Homo sapiens	NDDMYAAAAATAGMH	DKCTATTTTTRKHHN	ChIP-seq Mathelier et al.(2014) MA0497.1	0.938	0.938
MEF2C M07980_2.00	Homo sapiens	NDDYYAAAAATAGHH	DDCTATTTTTRRHHN	ChIP-seq Gerstein et al.(2012) GM12878_MEF2C_HudsonAlpha	0.938	0.938
MEF2C M09248_2.00	Homo sapiens	DYYAAAAATARMH	DKYTATTTTTRRH	Misc Kulakovskiy et al.(2013) MEF2C_HUMAN.H11MO.0.A	0.938	0.938
Mef2c M09253_2.00	Mus musculus	DDMYAAAAATAGMHN	NDKCTATTTTTRKHH	Misc Kulakovskiy et al.(2013) MEF2C_MOUSE.H11MO.0.A	0.938	0.938
MEF2C M09597_2.00	Homo sapiens	DHYWDAAATARM	KYTATTTHWRDH	Misc Heinz et al.(2010) GM12878-Mef2c_GSE32465	0.938	0.938
MEF2C M10945_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2C_02	0.979	0.979
MEF2C M10946_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2C_Q4	0.979	0.979
MEF2C M05552_2.00	Homo sapiens	CYWWATWWGG	CCWWATWWRG	SELEX Yin et al.(2017) MEF2C_FL_Methyl-HT-SELEX	0.938	0.938
MEF2D M03343_2.00	Homo sapiens	DCTAWAAATAGM	KCTATTTWTAGH	SELEX Jolma et al.(2013) MEF2D_1	0.958	0.958
MEF2D M05555_2.00	Homo sapiens	CYWWATWWGG	CCWWATWWRG	SELEX Yin et al.(2017) MEF2D_eDBD_HT-SELEX	0.958	0.958
MEF2D M09250_2.00	Homo sapiens	CTAWAAATAGMH	DKCTATTTWTAG	Misc Kulakovskiy et al.(2013) MEF2D_HUMAN.H11MO.0.A	0.958	0.958
Mef2d M09252_2.00	Mus musculus	DDCTAWAAATAGMH	DKCTATTTWTAGHH	Misc Kulakovskiy et al.(2013) MEF2D_MOUSE.H11MO.0.A	0.917	0.917
MEF2D M10957_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2D_Q4	0.917	0.917
MEF2D M05556_2.00	Homo sapiens	CYWWATWWGG	CCWWATWWRG	SELEX Yin et al.(2017) MEF2D_eDBD_Methyl-HT-SELEX	0.917	0.917
MEF2B M03344_2.00	Homo sapiens	RCTAWAAATAGM	KCTATTTWTAGY	SELEX Jolma et al.(2013) MEF2B_1	0.896	0.896
MEF2B M05557_2.00	Homo sapiens	CYNDWWWHGG	CCDWWWHNRG	SELEX Yin et al.(2017) MEF2B_eDBD_HT-SELEX	0.896	0.896
MEF2B M05559_2.00	Homo sapiens	CCVDWTATGGTAACA	TGTTACCATAWHBGG	SELEX Yin et al.(2017) MEF2B_FL_HT-SELEX	0.896	0.896
MEF2B M09251_2.00	Homo sapiens	CYWAAAATAGHHHH	DDDDCTATTTTWRG	Misc Kulakovskiy et al.(2013) MEF2B_HUMAN.H11MO.0.A	0.917	0.917
MEF2B M05558_2.00	Homo sapiens	CYWWWWWNGG	CCNWWWWWRG	SELEX Yin et al.(2017) MEF2B_eDBD_Methyl-HT-SELEX	0.917	0.917
MEF2B M05560_2.00	Homo sapiens	CCVDATATGGTAACR	YGTTACCATATHBGG	SELEX Yin et al.(2017) MEF2B_FL_Methyl-HT-SELEX	0.896	0.896
Mef2 M08214_2.00	Drosophila melanogaster	YTAWWWWTAR	YTAWWWWTAR	ChIP-seq Contrino et al.(2012) Mf26	0.854	0.854
Mef2b M10958_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2B_02	0.875	0.875
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AAH46368	MADS box	10	57	RIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY
ACL00845	MADS box	10	57	RIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY
ACL00846	MADS box	10	57	RIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY
ACL00847	MADS box	10	57	RIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY
ACL00848	MADS box	10	57	RIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY
CAA79530	MADS box	10	57	RIMDDRNKQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY

Links
Other MADS box family TFs
Other *Xenopus laevis* TFs

507 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL003602	Aedes aegypti	AAEL003602	N	0.000
Alligator_sinensis_CCG009248.1	Alligator sinensis	Alligator_sinensis_CCG009248.1	N	0.000
PRDM8	Anolis carolinensis	ENSACAG00000010106	N	0.000
AALB005765	Anopheles albimanus	AALB005765	N	0.000
AARA007771	Anopheles arabiensis	AARA007771	N	0.000
AATE006171	Anopheles atroparvus	AATE006171	N	0.000
ACHR001790	Anopheles christyi	ACHR001790	N	0.000
ACUA006984	Anopheles culicifacies	ACUA006984	N	0.000
ADIR008055	Anopheles dirus	ADIR008055	N	0.000
AEPI001699	Anopheles epiroticus	AEPI001699	N	0.000
AFAF012484	Anopheles farauti	AFAF012484	N	0.000
AFUN008026	Anopheles funestus	AFUN008026	N	0.000
AGAP007109	Anopheles gambiae	AGAP007109	N	0.000
AMAM024265	Anopheles maculatus	AMAM024265	N	0.000
AMEC019433	Anopheles melas	AMEC019433	N	0.000
AMEC009079	Anopheles melas	AMEC009079	N	0.000
AMEM014597	Anopheles merus	AMEM014597	N	0.000
AMIN011248	Anopheles minimus	AMIN011248	N	0.000
AQUA002036	Anopheles quadriannulatus	AQUA002036	N	0.000
ASIS021384	Anopheles sinensis	ASIS021384	N	0.000
ASTEI06883	Anopheles stephensi	ASTEI06883	N	0.000
ENSAMXG00000020060	Astyanax mexicanus	ENSAMXG00000020060	N	0.000
BGIBMGA012741	Bombyx mori	BGIBMGA012741	N	0.000
fgenesh2_pg.scaffold_282000018	Branchiostoma floridae	fgenesh2_pg.scaffold_282000018	N	0.000
PRDM8	Callithrix jacchus	ENSCJAG00000015064	N	0.000
PRDM8	Canis familiaris	ENSCAFG00000008881	N	0.000
CapteG221467	Capitella teleta	CapteG221467	N	0.000
PRDM8	Cavia porcellus	ENSCPOG00000019738	N	0.000
CpipJ_CPIJ004963	Culex pipiens	CpipJ_CPIJ004963	N	0.000
CPIJ004963	Culex quinquefasciatus	CPIJ004963	N	0.000
KGM_11907	Danaus plexippus	KGM_11907	N	0.000
prdm8b	Danio rerio	ENSDARG00000054683	N	0.000
PRDM8	Dasypus novemcinctus	ENSDNOG00000011667	N	0.000
ENSECAG00000017767	Equus caballus	ENSECAG00000017767	N	0.000
ENSFCAG00000026794	Felis catus	ENSFCAG00000026794	N	0.000
ENSGMOG00000016370	Gadus morhua	ENSGMOG00000016370	N	0.000
ENSGALG00000026560	Gallus gallus	ENSGALG00000026560	N	0.000
PRDM8	Gorilla gorilla	ENSGGOG00000007501	N	0.000
HMEL017852	Heliconius melpomene	HMEL017852	N	0.000
PRDM8	Homo sapiens	ENSG00000152784	N	0.000
ENSSTOG00000015688	Ictidomys tridecemlineatus	ENSSTOG00000015688	N	0.000
ISCW009928	Ixodes scapularis	ISCW009928	N	0.000
ENSLACG00000001866	Latimeria chalumnae	ENSLACG00000001866	N	0.000
ENSLOCG00000007226	Lepisosteus oculatus	ENSLOCG00000007226	N	0.000
LDEC001191	Leptinotarsa decemlineata	LDEC001191	N	0.000
LotgiG69958	Lottia gigantea	LotgiG69958	N	0.000
LCUP008185	Lucilia cuprina	LCUP008185	N	0.000
ENSP00000406998	Macaca fascicularis	ENSP00000406998	N	0.000
PRDM8	Macaca mulatta	ENSMMUG00000003338	N	0.000
ENSMEUG00000015872	Macropus eugenii	ENSMEUG00000015872	N	0.000
MCINX010301	Melitaea cinxia	MCINX010301	N	0.000
PRDM8	Monodelphis domestica	ENSMODG00000020789	N	0.000
MDOA007546	Musca domestica	MDOA007546	N	0.000
ENSMPUG00000006558	Mustela putorius furo	ENSMPUG00000006558	N	0.000
Prdm8	Mus musculus	ENSMUSG00000035456	N	0.000
PRDM8	Myotis lucifugus	ENSMLUG00000030190	N	0.000
ENSNLEG00000008504	Nomascus leucogenys	ENSNLEG00000008504	N	0.000
Ocbimv22006527m.g	Octopus bimaculoides	Ocbimv22006527m.g	N	0.000
Ogr08710	Ophisaurus gracilis	Ogr08710	N	0.000
ENSONIG00000014038	Oreochromis niloticus	ENSONIG00000014038	N	0.000
prdm8b	Oryzias latipes	ENSORLG00000017786	N	0.000
ENSOGAG00000026262	Otolemur garnettii	ENSOGAG00000026262	N	0.000
ENSOARG00000018972	Ovis aries	ENSOARG00000018972	N	0.000
ENSPANG00000024349	Papio anubis	ENSPANG00000024349	N	0.000
PHUM271650	Pediculus humanus	PHUM271650	N	0.000
ENSPMAG00000005756	Petromyzon marinus	ENSPMAG00000005756	N	0.000
PPAI006396	Phlebotomus papatasi	PPAI006396	N	0.000
ENSPFOG00000011716	Poecilia formosa	ENSPFOG00000011716	N	0.000
Pvit_15291	Pogona vitticeps	Pvit_15291	N	0.000
ENSPPYG00000014879	Pongo abelii	ENSPPYG00000014879	N	0.000
PRDM8	Procavia capensis	ENSPCAG00000001081	N	0.000
Prdm8	Rattus norvegicus	ENSRNOG00000002004	N	0.000
Sakowv30017448m.g	Saccoglossus kowalevskii	Sakowv30017448m.g	N	0.000
ENSSHAG00000018147	Sarcophilus harrisii	ENSSHAG00000018147	N	0.000
SMU15028407	Schmidtea mediterranea	SMU15028407	N	0.000
PRDM8	Sorex araneus	ENSSARG00000009823	N	0.000
SMAR006435	Strigamia maritima	SMAR006435	N	0.000
prdm8b	Takifugu rubripes	ENSTRUG00000001003	N	0.000
tetur11g03890	Tetranychus urticae	tetur11g03890	N	0.000
prdm8b	Tetraodon nigroviridis	ENSTNIG00000016712	N	0.000
TC013073	Tribolium castaneum	TC013073	N	0.000
PRDM8	Tupaia belangeri	ENSTBEG00000006138	N	0.000
prdm8	Xenopus tropicalis	XB-GENE-984391	N	0.000
ENSXMAG00000009993	Xiphophorus maculatus	ENSXMAG00000009993	N	0.000
L798_05037	Zootermopsis nevadensis	L798_05037	N	0.000

mef2a.L (Xenopus laevis) MADS box

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

507 Related TFs

mef2a.L **(Xenopus laevis)
MADS box**