AB03118.1 (Alternaria brassicicola)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 AB03118.1 T259307_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.750 0.750
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.750 0.750
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.750 0.750
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AB03118.1 MADS box 10 57

Links

Other MADS box family TFs
Other Alternaria brassicicola TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB04096.1 Alternaria brassicicola AB04096.1 N 0.000
BAUCODRAFT_141759 Baudoinia compniacensis BAUCODRAFT_141759 N 0.000
COCC4DRAFT_160284 Bipolaris maydis COCC4DRAFT_160284 N 0.000
COCMIDRAFT_2323 Bipolaris oryzae COCMIDRAFT_2323 N 0.000
COCSADRAFT_243860 Bipolaris sorokiniana COCSADRAFT_243860 N 0.000
COCCADRAFT_99640 Bipolaris zeicola COCCADRAFT_99640 N 0.000
estExt_Genewise1Plus.C_11595 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_11595 N 0.000
CCM_04908 Cordyceps militaris CCM_04908 N 0.000
PV11_00756 Exophiala sideris PV11_00756 N 0.000
PTT_12090 Pyrenophora teres PTT_12090 N 0.000
PTRG_00020 Pyrenophora triticirepentis PTRG_00020 N 0.000
SETTUDRAFT_145735 Setosphaeria turcica SETTUDRAFT_145735 N 0.000
SNOG_11733 Stagonospora nodorum SNOG_11733 N 0.000