AFAF006302 (Anopheles farauti)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 AFAF006302 T259489_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.957 0.957
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.957 0.957
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.913 0.913
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.913 0.913
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.913 0.913
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.913 0.913
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.913 0.913
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.913 0.913
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.913 0.913
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.913 0.913
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.913 0.913
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.913 0.913
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.913 0.913
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.913 0.913
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.913 0.913
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.913 0.913
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.913 0.913
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.913 0.913
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.913 0.913
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.913 0.913
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.913 0.913
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.913 0.913
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.913 0.913
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.913 0.913
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.913 0.913
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AFAF006302-PA MADS box 151 173

Links

Other MADS box family TFs
Other Anopheles farauti TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000002645 Ailuropoda melanoleuca ENSAMEG00000002645 I 0.000
ENSAPLG00000011422 Anas platyrhynchos ENSAPLG00000011422 I 0.000
ENSACAG00000005519 Anolis carolinensis ENSACAG00000005519 I 0.000
Afo_R013608 Aptenodytes forsteri Afo_R013608 I 0.000
ENSBTAP00000005489-D1 Bos grunniens ENSBTAP00000005489-D1 I 0.000
VEZF1 Bos taurus ENSBTAG00000004193 I 0.000
Brh_R008815 Buceros rhinoceros Brh_R008815 I 0.000
VEZF1 Callithrix jacchus ENSCJAG00000014022 I 0.000
Aan_R014132 Calypte anna Aan_R014132 I 0.000
VEZF1 Canis familiaris ENSCAFG00000017426 I 0.000
VEZF1 Cavia porcellus ENSCPOG00000002637 I 0.000
ENSCSAG00000005638 Chlorocebus sabaeus ENSCSAG00000005638 I 0.000
VEZF1 Choloepus hoffmanni ENSCHOG00000007280 I 0.000
VEZF1 Dasypus novemcinctus ENSDNOG00000034294 I 0.000
VEZF1 Equus caballus ENSECAG00000016083 I 0.000
VEZF1 Erinaceus europaeus ENSEEUG00000009273 I 0.000
VEZF1 Felis catus ENSFCAG00000004551 I 0.000
ENSFALG00000005040 Ficedula albicollis ENSFALG00000005040 I 0.000
VEZF1 Gallus gallus ENSGALG00000005530 I 0.000
Gfo_R012754 Geospiza fortis Gfo_R012754 I 0.000
VEZF1 Gorilla gorilla ENSGGOG00000004387 I 0.000
VEZF1 Homo sapiens ENSG00000136451 D 0.000
ENSSTOG00000000239 Ictidomys tridecemlineatus ENSSTOG00000000239 I 0.000
VEZF1 Loxodonta africana ENSLAFG00000029087 I 0.000
ENSMMUP00000006278 Macaca fascicularis ENSMMUP00000006278 I 0.000
VEZF1 Macaca mulatta ENSMMUG00000004723 I 0.000
VEZF1 Meleagris gallopavo ENSMGAG00000008207 I 0.000
VEZF1 Microcebus murinus ENSMICG00000016243 I 0.000
VEZF1 Monodelphis domestica ENSMODG00000014778 I 0.000
ENSMPUG00000015370 Mustela putorius furo ENSMPUG00000015370 I 0.000
Vezf1 Mus musculus ENSMUSG00000018377 I 0.000
ENSMUSG00000098546 Mus musculus ENSMUSG00000098546 I 0.000
Myotis_brandtii_VEZF1_10020669 Myotis brandtii Myotis_brandtii_VEZF1_10020669 I 0.000
VEZF1 Myotis lucifugus ENSMLUG00000011019 I 0.000
ENSNLEG00000008084 Nomascus leucogenys ENSNLEG00000008084 I 0.000
VEZF1 Ochotona princeps ENSOPRG00000000899 I 0.000
VEZF1 Ornithorhynchus anatinus ENSOANG00000007321 I 0.000
VEZF1 Oryctolagus cuniculus ENSOCUG00000017673 I 0.000
VEZF1 Otolemur garnettii ENSOGAG00000014483 I 0.000
ENSOARG00000008213 Ovis aries ENSOARG00000008213 I 0.000
VEZF1 Pan troglodytes ENSPTRG00000009442 I 0.000
ENSPANG00000022307 Papio anubis ENSPANG00000022307 I 0.000
ENSPSIG00000008918 Pelodiscus sinensis ENSPSIG00000008918 I 0.000
VEZF1 Procavia capensis ENSPCAG00000005140 I 0.000
VEZF1 Pteropus vampyrus ENSPVAG00000000518 I 0.000
Vezf1 Rattus norvegicus ENSRNOG00000009819 I 0.000
ENSSHAG00000003506 Sarcophilus harrisii ENSSHAG00000003506 I 0.000
VEZF1 Sus scrofa ENSSSCG00000017623 I 0.000
ENSSSCG00000025930 Sus scrofa ENSSSCG00000025930 I 0.000
ENSTGUG00000015998 Taeniopygia guttata ENSTGUG00000015998 I 0.000
ENSTGUG00000008421 Taeniopygia guttata ENSTGUG00000008421 I 0.000
VEZF1 Tupaia belangeri ENSTBEG00000015173 I 0.000
VEZF1 Tursiops truncatus ENSTTRG00000007309 I 0.000
Tal_R013318 Tyto alba Tal_R013318 I 0.000
vezf1.S Xenopus laevis XB-GENE-481527 I 0.000
vezf1.L Xenopus laevis XB-GENE-6256471 I 0.000
vezf1 Xenopus tropicalis XB-GENE-481523 I 0.000