TRFL2 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Al_scaffold_0001_698 T266099_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.909 1.000
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.849 0.957
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.841 0.936
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.841 0.936
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.831 0.957
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0001_698 Myb 526 576

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005235 Ailuropoda melanoleuca ENSAMEG00000005235 N 0.000
Alligator_sinensis_CCG000203.1 Alligator sinensis Alligator_sinensis_CCG000203.1 N 0.000
USF3 Anolis carolinensis ENSACAG00000006745 N 0.000
Afo_R005482 Aptenodytes forsteri Afo_R005482 N 0.000
ENSP00000420721-D1 Bos grunniens ENSP00000420721-D1 N 0.000
USF3 Bos taurus ENSBTAG00000021000 N 0.000
Brh_R007650 Buceros rhinoceros Brh_R007650 N 0.000
USF3 Callithrix jacchus ENSCJAG00000020264 N 0.000
USF3 Canis familiaris ENSCAFG00000010692 N 0.000
ENSCPOG00000006428 Cavia porcellus ENSCPOG00000006428 N 0.000
ENSCSAG00000006785 Chlorocebus sabaeus ENSCSAG00000006785 N 0.000
USF3 Dasypus novemcinctus ENSDNOG00000040900 N 0.000
USF3 Equus caballus ENSECAG00000024549 N 0.000
USF3 Felis catus ENSFCAG00000004876 N 0.000
ENSFALG00000005129 Ficedula albicollis ENSFALG00000005129 N 0.000
ENSGALG00000014808 Gallus gallus ENSGALG00000014808 N 0.000
Gfo_R000246 Geospiza fortis Gfo_R000246 N 0.000
USF3 Gorilla gorilla ENSGGOG00000001005 N 0.000
USF3 Homo sapiens ENSG00000176542 N 0.000
ENSSTOG00000029223 Ictidomys tridecemlineatus ENSSTOG00000029223 N 0.000
ENSLACG00000009844 Latimeria chalumnae ENSLACG00000009844 N 0.000
ENSLOCG00000003056 Lepisosteus oculatus ENSLOCG00000003056 N 0.000
USF3 Loxodonta africana ENSLAFG00000009455 N 0.000
ENSP00000420721 Macaca fascicularis ENSP00000420721 N 0.000
USF3 Meleagris gallopavo ENSMGAG00000014246 N 0.000
USF3 Monodelphis domestica ENSMODG00000018158 N 0.000
Usf3 Mus musculus ENSMUSG00000068284 N 0.000
Myotis_brandtii_KIAA2018_10016078 Myotis brandtii Myotis_brandtii_KIAA2018_10016078 N 0.000
USF3 Myotis lucifugus ENSMLUG00000004274 N 0.000
ENSNLEG00000004615 Nomascus leucogenys ENSNLEG00000004615 N 0.000
USF3 Ochotona princeps ENSOPRG00000014253 N 0.000
USF3 Oryctolagus cuniculus ENSOCUG00000013550 N 0.000
USF3 Otolemur garnettii ENSOGAG00000032665 N 0.000
ENSOARG00000019468 Ovis aries ENSOARG00000019468 N 0.000
USF3 Pan troglodytes ENSPTRG00000030159 N 0.000
ENSPANG00000019193 Papio anubis ENSPANG00000019193 N 0.000
ENSPPYG00000013537 Pongo abelii ENSPPYG00000013537 N 0.000
USF3 Pteropus vampyrus ENSPVAG00000006151 N 0.000
Usf3 Rattus norvegicus ENSRNOG00000027756 N 0.000
ENSSHAG00000006667 Sarcophilus harrisii ENSSHAG00000006667 N 0.000
USF3 Sus scrofa ENSSSCG00000011918 N 0.000
ENSTGUG00000013363 Taeniopygia guttata ENSTGUG00000013363 N 0.000
ENSTGUG00000013682 Taeniopygia guttata ENSTGUG00000013682 N 0.000
USF3 Tursiops truncatus ENSTTRG00000000281 N 0.000
Tal_R000800 Tyto alba Tal_R000800 N 0.000
USF3 Vicugna pacos ENSVPAG00000011950 N 0.000
usf3 Xenopus tropicalis XB-GENE-6459248 N 0.000