AMTR_s00068p00097220 (Amborella trichopoda)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AMTR_s00068p00097220 T266226_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.841 0.925
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.687 0.634
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.687 0.634
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.674 0.731
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.674 0.731
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.667 0.645
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.666 0.699
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.666 0.645
MYB27
M07097_2.00 		Arabidopsis thaliana
HHTACCTAAYTTWWN
NWWAARTTAGGTADD		 Dap-seq
OMalley et al.(2016)
MYB27_col_a 		0.663 0.624
MYB27
M07098_2.00 		Arabidopsis thaliana
NYHTACCTAAYTTWHN
NDWAARTTAGGTADRN		 Dap-seq
OMalley et al.(2016)
MYB27_colamp_a 		0.663 0.624
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN20414 Myb 35 82
ERN20414 Myb 88 133

Links

Other Myb/SANT family TFs
Other Amborella trichopoda TFs

763 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL008350 Aedes aegypti AAEL008350 N
AALB006841 Anopheles albimanus AALB006841 N
AARA002562 Anopheles arabiensis AARA002562 N
ACUA018382 Anopheles culicifacies ACUA018382 N
ADIR000927 Anopheles dirus ADIR000927 N
AEPI000454 Anopheles epiroticus AEPI000454 N
AFAF016022 Anopheles farauti AFAF016022 N
AFUN011482 Anopheles funestus AFUN011482 N
AGAP000876 Anopheles gambiae AGAP000876 N
AMAM014999 Anopheles maculatus AMAM014999 N
AMEC019303 Anopheles melas AMEC019303 N
AMEM003072 Anopheles merus AMEM003072 N
AMIN005829 Anopheles minimus AMIN005829 N
AQUA002447 Anopheles quadriannulatus AQUA002447 N
ASTEI01188 Anopheles stephensi ASTEI01188 N
BGIBMGA001001 Bombyx mori BGIBMGA001001 N
HMEL006591 Heliconius melpomene HMEL006591 N