HHO5 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT4G37180 T266506_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HHO5
M07112_2.00		 Arabidopsis thaliana
HNDAAGATTCH
DGAATCTTHND		 Dap-seq
OMalley et al.(2016)
AT4G37180_col_a		 (Direct) (Direct)
HHO5
M07113_2.00		 Arabidopsis thaliana
NNDAAGATTCY
RGAATCTTHNN		 Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HHO3
M02289_2.00 		Arabidopsis thaliana
NWGATWCBNN
NNVGWATCWN		 PBM
Weirauch et al.(2014)
pTH7278 		0.714 0.830
HHO3
M07016_2.00 		Arabidopsis thaliana
NNDHNNAAKATTCY
RGAATMTTNNDHNN		 Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a 		0.714 0.830
HHO3
M07017_2.00 		Arabidopsis thaliana
HNNAAKATTCY
RGAATMTTNND		 Dap-seq
OMalley et al.(2016)
At1g25550_col 		0.714 0.830
EFM
M07044_2.00 		Arabidopsis thaliana
NNGAATATTCY
RGAATATTCNN		 Dap-seq
OMalley et al.(2016)
At2g03500_col_a 		0.711 0.809
EFM
M07045_2.00 		Arabidopsis thaliana
RGAATCHWAGATTC
GAATCTWDGATTCY		 Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a 		0.711 0.809
NIGT1
M02328_2.00 		Oryza sativa
NNKATHCNNN
NNNGDATMNN		 PBM
Weirauch et al.(2014)
pTH8646 		0.705 0.787
HRS1
M02284_2.00 		Arabidopsis thaliana
AGATTCYN
NRGAATCT		 PBM
Weirauch et al.(2014)
pTH7118 		0.703 0.787
HRS1
M01068_2.00 		Arabidopsis thaliana
NAGATTCBNN
NNVGAATCTN		 PBM
Sullivan et al.(2014)
pTH7648 		0.703 0.787
HRS1
M07004_2.00 		Arabidopsis thaliana
NDDWWVNAAKATTCY
RGAATMTTNBWWHHN		 Dap-seq
OMalley et al.(2016)
At1g13300_col_a 		0.703 0.787
HHO2
M02290_2.00 		Arabidopsis thaliana
NNKATHCNNN
NNNGDATMNN		 PBM
Weirauch et al.(2014)
pTH7115 		0.696 0.809
HHO2
M07029_2.00 		Arabidopsis thaliana
AKATTCY
RGAATMT		 Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a 		0.696 0.809
HHO2
M07030_2.00 		Arabidopsis thaliana
RDATYNNAGATTC
GAATCTNNRATHY		 Dap-seq
OMalley et al.(2016)
At1g68670_col 		0.696 0.809
PK19779.1
M02354_2.00 		Cannabis sativa
NNKATNCNNN
NNNGNATMNN		 PBM
Weirauch et al.(2014)
pTH9610 		0.687 0.787
HHO6
M07024_2.00 		Arabidopsis thaliana
GAATCTNNDAT
ATHNNAGATTC		 Dap-seq
OMalley et al.(2016)
AT1G49560_col_a 		0.669 0.809
HHO6
M07025_2.00 		Arabidopsis thaliana
DGAATCTHNGATHCN
NGDATCNDAGATTCH		 Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a 		0.669 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G37180.1 Myb 212 263
AT4G37180.2 Myb 219 270
AT4G37180.3 Myb 212 262

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

341 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GB45040 Apis mellifera GB45040 I
CapteG30011 Capitella teleta CapteG30011 I
YQE_06283 Dendroctonus ponderosae YQE_06283 I
ECANG7_03121 Echinococcus canadensis ECANG7_03121 N
EmuJ_000040400 Echinococcus multilocularis EmuJ_000040400 N
KLF11 Echinops telfairi ENSETEG00000002915 I
D915_00578 Fasciola hepatica D915_00578 I
KLF11 Gasterosteus aculeatus ENSGACG00000008836 I
TTAC_0000207201 Hydatigera taeniaeformis TTAC_0000207201 N
HmN_000574300 Hymenolepis microstoma HmN_000574300 N
HNAJ_0000189901 Hymenolepis nana HNAJ_0000189901 N
ISCW022767 Ixodes scapularis ISCW022767 I
MCOS_0000561801 Mesocestoides corti MCOS_0000561801 N
ENSONIG00000018808 Oreochromis niloticus ENSONIG00000018808 I
KLF11 Oryctolagus cuniculus ENSOCUG00000003809 I
KLF11 Oryzias latipes ENSORLG00000018102 I
PHUM248360 Pediculus humanus PHUM248360 I
ENSPFOG00000015744 Poecilia formosa ENSPFOG00000015744 I
SSLN_0001743101 Schistocephalus solidus SSLN_0001743101 N
SPER_0002733901 Spirometra erinaceieuropaei SPER_0002733901 N
TASK_0000192801 Taenia asiatica TASK_0000192801 N
TsM_000793400 Taenia solium TsM_000793400 N
tetur19g01530 Tetranychus urticae tetur19g01530 I
ENSXMAG00000009885 Xiphophorus maculatus ENSXMAG00000009885 I
L798_11927 Zootermopsis nevadensis L798_11927 I
L798_11067 Zootermopsis nevadensis L798_11067 I