RVE6 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G52660 T266564_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE6
M01081_2.00		 Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151		 (Direct) (Direct)
RVE6
M07138_2.00		 Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a		 (Direct) (Direct)
RVE6
M07139_2.00		 Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.899 0.978
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.891 0.935
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.891 0.935
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.891 0.935
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.891 0.935
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.891 0.935
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.808 0.848
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.793 0.870
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.793 0.870
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.793 0.870
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.697 0.674
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.661 0.630
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.661 0.630
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.661 0.630
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01081_2.00 Myb 51 96

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G52660.1 Myb 72 117
AT5G52660.2 Myb 72 117

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

323 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GUITHDRAFT_149835 Guillardia theta GUITHDRAFT_149835 N 0.000
GUITHDRAFT_99422 Guillardia theta GUITHDRAFT_99422 N 0.000
GUITHDRAFT_99420 Guillardia theta GUITHDRAFT_99420 N 0.000
GUITHDRAFT_99416 Guillardia theta GUITHDRAFT_99416 N 0.000
GUITHDRAFT_99412 Guillardia theta GUITHDRAFT_99412 N 0.000
GUITHDRAFT_99385 Guillardia theta GUITHDRAFT_99385 N 0.000
GUITHDRAFT_99374 Guillardia theta GUITHDRAFT_99374 N 0.000
GUITHDRAFT_151017 Guillardia theta GUITHDRAFT_151017 N 0.000
GUITHDRAFT_149856 Guillardia theta GUITHDRAFT_149856 N 0.000
GUITHDRAFT_149855 Guillardia theta GUITHDRAFT_149855 N 0.000
GUITHDRAFT_149839 Guillardia theta GUITHDRAFT_149839 N 0.000
GUITHDRAFT_101978 Guillardia theta GUITHDRAFT_101978 N 0.000
GUITHDRAFT_104241 Guillardia theta GUITHDRAFT_104241 N 0.000
GUITHDRAFT_104240 Guillardia theta GUITHDRAFT_104240 N 0.000
GUITHDRAFT_103685 Guillardia theta GUITHDRAFT_103685 N 0.000
GUITHDRAFT_103684 Guillardia theta GUITHDRAFT_103684 N 0.000
GUITHDRAFT_103683 Guillardia theta GUITHDRAFT_103683 N 0.000
GUITHDRAFT_103151 Guillardia theta GUITHDRAFT_103151 N 0.000
GUITHDRAFT_103150 Guillardia theta GUITHDRAFT_103150 N 0.000
GUITHDRAFT_102413 Guillardia theta GUITHDRAFT_102413 N 0.000
GUITHDRAFT_102412 Guillardia theta GUITHDRAFT_102412 N 0.000