Bo1g144410 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo1g144410 T267113_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.909 0.978
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.909 0.978
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.909 0.978
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.909 0.957
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.909 0.957
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.901 0.935
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.891 0.913
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.891 0.913
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.891 0.913
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.795 0.848
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.795 0.848
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.795 0.848
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.739
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.696
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.696
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.696
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g144410.1 Myb 39 84

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG011250.1 Alligator sinensis Alligator_sinensis_CCG011250.1 I
ZNF281 Anolis carolinensis ENSACAG00000006286 I
Afo_R004007 Aptenodytes forsteri Afo_R004007 I
ENSAMXG00000006245 Astyanax mexicanus ENSAMXG00000006245 I
ENSAMXG00000015147 Astyanax mexicanus ENSAMXG00000015147 I
ENSP00000356322-D1 Bos grunniens ENSP00000356322-D1 I
Brh_R005182 Buceros rhinoceros Brh_R005182 I
ZNF281 Callithrix jacchus ENSCJAG00000005104 I
Aan_R014758 Calypte anna Aan_R014758 I
Cmyd_10021057 Chelonia mydas Cmyd_10021057 I
ENSCSAG00000000250 Chlorocebus sabaeus ENSCSAG00000000250 I
ZNF281 Choloepus hoffmanni ENSCHOG00000004074 I
znf281b Danio rerio ENSDARG00000035910 I
znf281a Danio rerio ENSDARG00000000567 I
ZNF281 Dasypus novemcinctus ENSDNOG00000016981 I
Zfp281 Dipodomys ordii ENSDORG00000002833 I
ZNF281 Equus caballus ENSECAG00000024354 I
ZNF281 Erinaceus europaeus ENSEEUG00000011443 I
ZNF281 Felis catus ENSFCAG00000028447 I
ENSFALG00000014467 Ficedula albicollis ENSFALG00000014467 I
ENSGMOG00000001704 Gadus morhua ENSGMOG00000001704 I
ENSGMOG00000008854 Gadus morhua ENSGMOG00000008854 I
znf281b Gasterosteus aculeatus ENSGACG00000006858 I
znf281a Gasterosteus aculeatus ENSGACG00000009536 I
Gfo_R006633 Geospiza fortis Gfo_R006633 I
ZNF281 Gorilla gorilla ENSGGOG00000010349 I
ZNF281 Homo sapiens ENSG00000162702 D
ENSLACG00000014572 Latimeria chalumnae ENSLACG00000014572 I
ENSP00000356322 Macaca fascicularis ENSP00000356322 I
ZNF281 Macaca mulatta ENSMMUG00000007334 I
ENSMEUG00000011709 Macropus eugenii ENSMEUG00000011709 I
ZNF281 Microcebus murinus ENSMICG00000001070 I
ZNF281 Monodelphis domestica ENSMODG00000012840 I
ENSMPUG00000019246 Mustela putorius furo ENSMPUG00000019246 I
Zfp281 Mus musculus ENSMUSG00000041483 D
ENSNLEG00000018067 Nomascus leucogenys ENSNLEG00000018067 I
Ogr00130 Ophisaurus gracilis Ogr00130 I
ENSONIG00000016453 Oreochromis niloticus ENSONIG00000016453 I
ENSONIG00000000839 Oreochromis niloticus ENSONIG00000000839 I
ZNF281 Ornithorhynchus anatinus ENSOANG00000004857 I
ZNF281 Oryctolagus cuniculus ENSOCUG00000010120 I
znf281b Oryzias latipes ENSORLG00000005292 I
znf281a Oryzias latipes ENSORLG00000002799 I
ZNF281 Otolemur garnettii ENSOGAG00000010366 I
ZNF281 Pan troglodytes ENSPTRG00000015318 I
ENSPANG00000017386 Papio anubis ENSPANG00000017386 I
ENSPFOG00000008024 Poecilia formosa ENSPFOG00000008024 I
ENSPFOG00000000851 Poecilia formosa ENSPFOG00000000851 I
Pvit_14619 Pogona vitticeps Pvit_14619 I
Zfp281 Rattus norvegicus ENSRNOG00000058643 I
ZNF281 Sus scrofa ENSSSCG00000010911 I
ZNF281 Taeniopygia guttata ENSTGUG00000004438 I
znf281b Takifugu rubripes ENSTRUG00000008207 I
znf281a Takifugu rubripes ENSTRUG00000016619 I
ENSTSYG00000007604 Tarsius syrichta ENSTSYG00000007604 I
znf281b Tetraodon nigroviridis ENSTNIG00000018917 I
znf281a Tetraodon nigroviridis ENSTNIG00000016430 I
ZNF281 Tursiops truncatus ENSTTRG00000004326 I
Tal_R010113 Tyto alba Tal_R010113 I
znf281 Xenopus tropicalis XB-GENE-5933312 I