Bo6g086910 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo6g086910 T267426_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATY13
M07035_2.00 		Arabidopsis thaliana
HAMCHMCCAMCHAHH
DDTDGKTGGKDGKTD		 Dap-seq
OMalley et al.(2016)
ATY13_col_a 		0.815 0.925
ATY13
M07036_2.00 		Arabidopsis thaliana
HAMCHHCCAACHAHH
DDTDGTTGGDDGKTD		 Dap-seq
OMalley et al.(2016)
ATY13_colamp_a 		0.815 0.925
MYB96
M07153_2.00 		Arabidopsis thaliana
HHHHHYHHCCAACYAHYWNHN
NDNWRDTRGTTGGDDRDDDDD		 Dap-seq
OMalley et al.(2016)
MYB96_colamp_a 		0.809 0.914
MYB96
M07154_2.00 		Arabidopsis thaliana
YAMCHNCCAMCHAHHHHH
DDDDDTDGKTGGNDGKTR		 Dap-seq
OMalley et al.(2016)
MYB96_col_b 		0.809 0.914
MYB30
M07089_2.00 		Arabidopsis thaliana
NHHHCAACYACYWHH
DDWRGTRGTTGDDDN		 Dap-seq
OMalley et al.(2016)
MYB30_col_a 		0.800 0.914
MYB30
M07090_2.00 		Arabidopsis thaliana
HHHYYHCCAACYAMY
RKTRGTTGGDRRDDD		 Dap-seq
OMalley et al.(2016)
MYB30_colamp_a 		0.800 0.914
MYB94
M02298_2.00 		Arabidopsis thaliana
DACCGGTH
DACCGGTH		 PBM
Weirauch et al.(2014)
pTH7085 		0.779 0.892
MYB94
M07094_2.00 		Arabidopsis thaliana
HHNYHYCAACYACYWHHNN
NNDDWRGTRGTTGRDRNDD		 Dap-seq
OMalley et al.(2016)
MYB94_col_b 		0.779 0.892
MYB60
M07001_2.00 		Arabidopsis thaliana
HNNHYYCAACYACYWHHNN
NNDDWRGTRGTTGRRDNND		 Dap-seq
OMalley et al.(2016)
MYB60_col 		0.769 0.892
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g086910.1 Myb 14 61
Bo6g086910.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

318 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000001 Ailuropoda melanoleuca ENSAMEG00000000001 I 0.000
HNF4G Bos taurus ENSBTAG00000008280 I 0.000
HNF4G Callithrix jacchus ENSCJAG00000000541 I 0.000
HNF4G Canis familiaris ENSCAFG00000008285 I 0.000
HNF4G Cavia porcellus ENSCPOG00000011625 I 0.000
ENSCSAG00000013470 Chlorocebus sabaeus ENSCSAG00000013470 I 0.000
HNF4G Choloepus hoffmanni ENSCHOG00000000938 I 0.000
HNF4G Dasypus novemcinctus ENSDNOG00000035639 I 0.000
HNF4G Equus caballus ENSECAG00000000005 I 0.000
HNF4G Erinaceus europaeus ENSEEUG00000009253 I 0.000
HNF4G Felis catus ENSFCAG00000025545 I 0.000
HNF4G Gorilla gorilla ENSGGOG00000008488 I 0.000
HNF4G Homo sapiens ENSG00000164749 D 0.000
ENSSTOG00000007181 Ictidomys tridecemlineatus ENSSTOG00000007181 I 0.000
HNF4G Loxodonta africana ENSLAFG00000020911 I 0.000
ENSP00000379701 Macaca fascicularis ENSP00000379701 I 0.000
HNF4G Macaca mulatta ENSMMUG00000002774 I 0.000
ENSMPUG00000010141 Mustela putorius furo ENSMPUG00000010141 I 0.000
Hnf4g Mus musculus ENSMUSG00000017688 D 0.000
Myotis_brandtii_HNF4G_10031690 Myotis brandtii Myotis_brandtii_HNF4G_10031690 I 0.000
HNF4G Myotis lucifugus ENSMLUG00000004011 I 0.000
ENSNLEG00000001920 Nomascus leucogenys ENSNLEG00000001920 I 0.000
ENSOCUG00000012041 Oryctolagus cuniculus ENSOCUG00000012041 I 0.000
HNF4G Otolemur garnettii ENSOGAG00000010660 I 0.000
ENSOARG00000007140 Ovis aries ENSOARG00000007140 I 0.000
HNF4G Pan troglodytes ENSPTRG00000020357 I 0.000
ENSPANG00000001380 Papio anubis ENSPANG00000001380 I 0.000
ENSPPYG00000018686 Pongo abelii ENSPPYG00000018686 I 0.000
HNF4G Pteropus vampyrus ENSPVAG00000001778 I 0.000
Hnf4g Rattus norvegicus ENSRNOG00000008971 I 0.000
HNF4G Tupaia belangeri ENSTBEG00000010662 I 0.000