Bra019993 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra019993 T267917_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CDC5
M02698_2.00 		Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN		 SELEX
Mathelier et al.(2014)
MA0579.1 		0.909 1.000
CDC5
M11037_2.00 		Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN		 Transfac
Matys et al.(2006)
P$CDC5_01 		0.909 1.000
CDC5L
M11049_2.00 		Homo sapiens
GWKTTAAYRTAD
HTAYRTTAAMWC		 Transfac
Matys et al.(2006)
V$CDC5_01 		0.814 0.870
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra019993.1-P Myb 7 53
Bra019993.1-P Myb 59 103

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

574 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PHUM227240 Pediculus humanus PHUM227240 N 0.000
L596_g13401 Steinernema carpocapsae L596_g13401 N 0.000
L889_g19443 Steinernema feltiae L889_g19443 N 0.000
L893_g658 Steinernema glaseri L893_g658 N 0.000
L898_g23431 Steinernema monticolum L898_g23431 N 0.000
L892_g9187 Steinernema scapterisci L892_g9187 N 0.000