Bra025914 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra025914 T267995_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.876 0.891
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.876 0.891
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.876 0.891
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.876 0.891
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.876 0.891
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.833 0.804
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.833 0.804
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.805 0.783
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.778 0.761
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.760 0.717
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.760 0.717
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.718 0.696
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.718 0.696
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.718 0.696
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025914.1-P Myb 50 95

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

268 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIM_0000081901 Anisakis simplex ASIM_0000081901 I
ASIM_0001721601 Anisakis simplex ASIM_0001721601 I
ASU_05194 Ascaris suum ASU_05194 I
BTMF_0000237101 Brugia timori BTMF_0000237101 I
BXY_1736100 Bursaphelenchus xylophilus BXY_1736100 I
nDi.2.2.2.g03152 Dirofilaria immitis nDi.2.2.2.g03152 I
OFLC_0000546401 Onchocerca flexuosa OFLC_0000546401 I
nOo.2.0.1.g00302 Onchocerca ochengi nOo.2.0.1.g00302 I
WBGene00247740 Onchocerca volvulus WBGene00247740 I
PTRK_0000323600 Parastrongyloides trichosuri PTRK_0000323600 I
L596_g5604 Steinernema carpocapsae L596_g5604 I
L892_g21955 Steinernema scapterisci L892_g21955 I
SPAL_0001282200 Strongyloides papillosus SPAL_0001282200 I
SSTP_0000350000 Strongyloides stercoralis SSTP_0000350000 I
TCLT_0000975801 Thelazia callipaeda TCLT_0000975801 I
WUBG_02313 Wuchereria bancrofti WUBG_02313 I