LHY (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.1__131__AT1G01060.3 T270722_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.835 0.957
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.835 0.957
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.808 0.870
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.802 0.848
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.802 0.848
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.762 0.804
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.762 0.804
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.762 0.804
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.726 0.739
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.726 0.739
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.726 0.739
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.726 0.739
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.726 0.739
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.692 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__131__AT1G01060.3 Myb 24 69

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

276 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000301 Ailuropoda melanoleuca ENSAMEG00000000301 N 0.000
ENSBTAP00000011959-D1 Bos grunniens ENSBTAP00000011959-D1 N 0.000
ZNF572 Bos taurus ENSBTAG00000009072 N 0.000
ZNF572 Callithrix jacchus ENSCJAG00000012779 N 0.000
ZNF572 Canis familiaris ENSCAFG00000030125 N 0.000
ENSCSAG00000010162 Chlorocebus sabaeus ENSCSAG00000010162 N 0.000
ZNF572 Dasypus novemcinctus ENSDNOG00000009854 N 0.000
ENSDORG00000009190 Dipodomys ordii ENSDORG00000009190 N 0.000
ZNF572 Equus caballus ENSECAG00000012206 N 0.000
ZNF572 Felis catus ENSFCAG00000024394 N 0.000
ZNF572 Gorilla gorilla ENSGGOG00000006964 N 0.000
ZNF572 Homo sapiens ENSG00000180938 N 0.000
ENSSTOG00000013236 Ictidomys tridecemlineatus ENSSTOG00000013236 N 0.000
ENSP00000319305 Macaca fascicularis ENSP00000319305 N 0.000
ENSMMUG00000021103 Macaca mulatta ENSMMUG00000021103 N 0.000
ZNF572 Microcebus murinus ENSMICG00000017483 N 0.000
ZNF572 Monodelphis domestica ENSMODG00000001814 N 0.000
ENSMPUG00000001315 Mustela putorius furo ENSMPUG00000001315 N 0.000
Myotis_brandtii_ZNF572_10018150 Myotis brandtii Myotis_brandtii_ZNF572_10018150 N 0.000
ZNF572 Myotis lucifugus ENSMLUG00000000608 N 0.000
ENSNLEG00000005528 Nomascus leucogenys ENSNLEG00000005528 N 0.000
ZNF572 Ochotona princeps ENSOPRG00000004949 N 0.000
ZNF572 Otolemur garnettii ENSOGAG00000015777 N 0.000
ENSOARG00000008657 Ovis aries ENSOARG00000008657 N 0.000
ZNF572 Pan troglodytes ENSPTRG00000020571 N 0.000
ENSPPYG00000018871 Pongo abelii ENSPPYG00000018871 N 0.000
ZNF572 Pteropus vampyrus ENSPVAG00000005897 N 0.000
ENSSHAG00000005229 Sarcophilus harrisii ENSSHAG00000005229 N 0.000
ZNF572 Sorex araneus ENSSARG00000005346 N 0.000
ZNF572 Sus scrofa ENSSSCG00000005971 N 0.000
ENSTSYG00000006409 Tarsius syrichta ENSTSYG00000006409 N 0.000
ZNF572 Tupaia belangeri ENSTBEG00000002733 N 0.000
ZNF572 Tursiops truncatus ENSTTRG00000015484 N 0.000
ZNF572 Vicugna pacos ENSVPAG00000006529 N 0.000