ATMYB102 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.7__2173__AT4G21440.1 T270835_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.860 0.957
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.827 0.925
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.827 0.925
AtMYB41
M07109_2.00 		Arabidopsis thaliana
DHDBBYYACCTAMYW
WRKTAGGTRRVVHDH		 Dap-seq
OMalley et al.(2016)
MYB41_col_a 		0.777 0.903
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.724 0.731
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.724 0.731
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.677 0.828
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.677 0.828
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.675 0.763
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.675 0.763
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.674 0.785
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.674 0.785
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.661 0.699
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.661 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.7__2173__AT4G21440.1 Myb 14 61
fgenesh2_kg.7__2173__AT4G21440.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

427 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI008958 Acyrthosiphon pisum ACYPI008958 N
Alligator_sinensis_CCG004678.1 Alligator sinensis Alligator_sinensis_CCG004678.1 N
Alligator_sinensis_CCG000180.1 Alligator sinensis Alligator_sinensis_CCG000180.1 N
AFAF012002 Anopheles farauti AFAF012002 N
AGAP001761 Anopheles gambiae AGAP001761 N
AMEM008456 Anopheles merus AMEM008456 N
Afo_R008528 Aptenodytes forsteri Afo_R008528 N
ENSAMXG00000012483 Astyanax mexicanus ENSAMXG00000012483 N
estExt_gwp.C_860189 Branchiostoma floridae estExt_gwp.C_860189 N
e_gw.479.83.1 Branchiostoma floridae e_gw.479.83.1 N
Cflo_01607--XP_001123059.1_APIME Camponotus floridanus Cflo_01607--XP_001123059.1_APIME N
Cmyd_10017930 Chelonia mydas Cmyd_10017930 N
lag1-like1 Ciona intestinalis ENSCING00000006059 N
cers3b Danio rerio ENSDARG00000036337 N
ENSGMOG00000018099 Gadus morhua ENSGMOG00000018099 N
ENSGACG00000002760 Gasterosteus aculeatus ENSGACG00000002760 N
Hsal_14209--XP_001123059.1_APIME Harpegnathos saltator Hsal_14209--XP_001123059.1_APIME N
HelroG82517 Helobdella robusta HelroG82517 N
ENSLOCG00000004390 Lepisosteus oculatus ENSLOCG00000004390 N
LotgiG226091 Lottia gigantea LotgiG226091 N
ENSMGAG00000017003 Meleagris gallopavo ENSMGAG00000017003 N
MCINX005367 Melitaea cinxia MCINX005367 N
ENSMICG00000014767 Microcebus murinus ENSMICG00000014767 N
ENSMICG00000017321 Microcebus murinus ENSMICG00000017321 N
ENSMODG00000004533 Monodelphis domestica ENSMODG00000004533 N
ENSMODG00000004916 Monodelphis domestica ENSMODG00000004916 N
Myotis_brandtii_Lass6_10034918 Myotis brandtii Myotis_brandtii_Lass6_10034918 N
Ocbimv22016239m.g Octopus bimaculoides Ocbimv22016239m.g N
ENSONIG00000017329 Oreochromis niloticus ENSONIG00000017329 N
ENSONIG00000019701 Oreochromis niloticus ENSONIG00000019701 N
CERS5 Oryzias latipes ENSORLG00000010219 N
ENSOARG00000017904 Ovis aries ENSOARG00000017904 N
ENSPMAG00000008848 Petromyzon marinus ENSPMAG00000008848 N
ENSPFOG00000013551 Poecilia formosa ENSPFOG00000013551 N
ENSSHAG00000001540 Sarcophilus harrisii ENSSHAG00000001540 N
ENSSHAG00000003870 Sarcophilus harrisii ENSSHAG00000003870 N
ENSSHAG00000001747 Sarcophilus harrisii ENSSHAG00000001747 N
SINV24013 Solenopsis invicta SINV24013 N
SINV20227 Solenopsis invicta SINV20227 N
cers2a Takifugu rubripes ENSTRUG00000012292 N
CERS5 Takifugu rubripes ENSTRUG00000010435 N
cers4b Takifugu rubripes ENSTRUG00000000191 N
CERS5 Tetraodon nigroviridis ENSTNIG00000017897 N
cers2a Tetraodon nigroviridis ENSTNIG00000017545 N
AAL89720 Xenopus laevis AAL89720 N
cers3.L Xenopus laevis XB-GENE-6251639 N
cers5.S Xenopus laevis XB-GENE-866438 N
ENSXMAG00000010322 Xiphophorus maculatus ENSXMAG00000010322 N
L798_00373 Zootermopsis nevadensis L798_00373 N