MTR_4g088015 (Medicago truncatula)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 MTR_4g088015 T274812_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.685 0.763
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.685 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH30940 Myb 221 267
KEH30940 Myb 273 318

Links

Other Myb/SANT family TFs
Other Medicago truncatula TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22212 Aegilops tauschii F775_22212 I 0.663
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.685
MYB98 Arabidopsis thaliana AT4G18770 D 0.685
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.661
Bo1g019910 Brassica oleracea Bo1g019910 I 0.661
Bo3g157300 Brassica oleracea Bo3g157300 I 0.664
Bra013346 Brassica rapa Bra013346 I 0.661
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.661
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.661
Ca_19427 Cicer arietinum Ca_19427 I 0.723
Ca_17087 Cicer arietinum Ca_17087 I 0.706
Ca_07482 Cicer arietinum Ca_07482 I 0.701
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.663
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.663
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.732
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.673
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.695
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.662
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.714
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.669
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.677
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.663
MDP0000215359 Malus domestica MDP0000215359 I 0.663
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.671
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.691
MTR_7g451170 Medicago truncatula MTR_7g451170 N 0.790
MTR_7g037260 Medicago truncatula MTR_7g037260 I 0.780
MTR_7g037130 Medicago truncatula MTR_7g037130 N 0.722
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.686
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.709
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.697
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.684
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.684
Pm024743 Prunus mume Pm024743 I 0.671
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.671
Si039046m.g Setaria italica Si039046m.g I 0.667
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.681
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.672
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.672
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.681
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.667
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.663
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.663
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.663
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.671
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.661