CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OMERI02G03860 *(Oryza meridionalis)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	OMERI02G03860	T276034_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PHR1 M02329_2.00	Oryza sativa	NWKATNCBNN	NNVGNATMWN	PBM Weirauch et al.(2014) pTH7755	0.824	0.872
PHL6 M02295_2.00	Arabidopsis thaliana	NNWKATNCBN	NVGNATMWNN	PBM Weirauch et al.(2014) pTH7071	0.790	0.830
PHL6 M07083_2.00	Arabidopsis thaliana	NDGAAAACH	DGTTTTCHN	Dap-seq OMalley et al.(2016) At3g13040_col_b	0.790	0.830
PHR1 M02302_2.00	Arabidopsis thaliana	NWKATNCBNN	NNVGNATMWN	PBM Weirauch et al.(2014) pTH7249	0.746	0.830
PHL11 M07134_2.00	Arabidopsis thaliana	NNRAAKATTCYHHN	NDDRGAATMTTYNN	Dap-seq OMalley et al.(2016) AT5G45580_col_a	0.735	0.787
PHL11 M07135_2.00	Arabidopsis thaliana	NRAAKATTCYHHNN	NNDDRGAATMTTYN	Dap-seq OMalley et al.(2016) AT5G45580_colamp_a	0.735	0.787
PHL7 M02292_2.00	Arabidopsis thaliana	NWGATDCBNN	NNVGHATCWN	PBM Weirauch et al.(2014) pTH7253	0.729	0.830
PK10342.1 M02351_2.00	Cannabis sativa	WAGATKCS	SGMATCTW	PBM Weirauch et al.(2014) pTH9489	0.729	0.830
PHL7 M07040_2.00	Arabidopsis thaliana	DRNAKATTCBNHNNN	NNNDNVGAATMTNYH	Dap-seq OMalley et al.(2016) At2g01060_colamp_a	0.729	0.830
PHL7 M07041_2.00	Arabidopsis thaliana	VGAATATTCBNHH	DDNVGAATATTCB	Dap-seq OMalley et al.(2016) At2g01060_col	0.729	0.830
PHL1 M02310_2.00	Arabidopsis thaliana	NWKATNCBNN	NNVGNATMWN	PBM Weirauch et al.(2014) pTH7122	0.715	0.787
PHL1 M07132_2.00	Arabidopsis thaliana	MDRGAATATTCBNWN	NWNVGAATATTCYHK	Dap-seq OMalley et al.(2016) At5g29000_col_a	0.715	0.787
AT2G20400 M07046_2.00	Arabidopsis thaliana	NDNNDNHNNVDDDNNNHAWRGMATATTCB	VGAATATKCYWTDNNNHHHBNNDNHNNHN	Dap-seq OMalley et al.(2016) AT2G20400_col_a	0.705	0.830
AT2G20400 M07047_2.00	Arabidopsis thaliana	RDRGAATATTCBNWD	HWNVGAATATTCYHY	Dap-seq OMalley et al.(2016) AT2G20400_colamp_a	0.705	0.830
MYR1 M02309_2.00	Arabidopsis thaliana	NKATNCBNNN	NNNVGNATMN	PBM Weirauch et al.(2014) pTH8859	0.668	0.723
PHL12 M01077_2.00	Arabidopsis thaliana	NWKATTCBNN	NNVGAATMWN	PBM Sullivan et al.(2014) pTH7098	0.665	0.723
AT3G24120 M00729_2.00	Arabidopsis thaliana	NNKATDCBNN	NNVGHATMNN	PBM Chang et al.(2013) pTH7086	0.665	0.723
UNE16 M01270_2.00	Arabidopsis thaliana	NWKATTCBNN	NNVGAATMWN	PBM Lambert et al.(2019) pTH9967	0.665	0.723
PHL12 M07079_2.00	Arabidopsis thaliana	RGAATATTCYYTWN	NWARRGAATATTCY	Dap-seq OMalley et al.(2016) At3g12730_col_a	0.665	0.723
PHL12 M07080_2.00	Arabidopsis thaliana	NNRAAKATTCBHHN	NDDVGAATMTTYNN	Dap-seq OMalley et al.(2016) At3g12730_colamp_a	0.665	0.723
AT3G24120 M07085_2.00	Arabidopsis thaliana	HAKATTCB	VGAATMTD	Dap-seq OMalley et al.(2016) At3g24120_col_a	0.665	0.723
AT3G24120 M07086_2.00	Arabidopsis thaliana	NDRAAKATTCBHHN	NDDVGAATMTTYHN	Dap-seq OMalley et al.(2016) At3g24120_colamp_a	0.665	0.723
Q5IWM2_WHEAT M11059_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MYB80_01	0.664	0.745
MYR2 M02294_2.00	Arabidopsis thaliana	NKATDCBNN	NNVGHATMN	PBM Weirauch et al.(2014) pTH7097	0.662	0.702
MYR2 M07063_2.00	Arabidopsis thaliana	NNDAAKATTCYHHN	NDDRGAATMTTHNN	Dap-seq OMalley et al.(2016) At3g04030_col_a	0.662	0.702
MYR2 M07064_2.00	Arabidopsis thaliana	VRAAKATTCBHWNNN	NNNWDVGAATMTTYB	Dap-seq OMalley et al.(2016) At3g04030_colamp_a	0.662	0.702
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OMERI02G03860.1	Myb	265	316	RLRWTPELHERFVDAVNKLEGPEKATPKGVLKLMKVEGLTIYHIKSHLQKYR

Links
Other Myb/SANT family TFs
Other *Oryza meridionalis* TFs

819 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
LPERR01G01880	Leersia perrieri	LPERR01G01880	N	0.000
OBART01G02050	Oryza barthii	OBART01G02050	N	0.000
OB01G11960	Oryza brachyantha	OB01G11960	N	0.000
ORGLA01G0017500	Oryza glaberrima	ORGLA01G0017500	N	0.000
OGLUM01G02200	Oryza glumaepatula	OGLUM01G02200	N	0.000
BGIOSGA002708	Oryza indica	BGIOSGA002708	N	0.000
ONIVA01G02210	Oryza nivara	ONIVA01G02210	N	0.000
OPUNC01G01740	Oryza punctata	OPUNC01G01740	N	0.000
ORUFI01G02130	Oryza rufipogon	ORUFI01G02130	N	0.000
OS01G0131600	Oryza sativa	OS01G0131600	N	0.000

OMERI02G03860 (Oryza meridionalis) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

819 Related TFs

OMERI02G03860 **(Oryza meridionalis)
Myb/SANT**