POPTR_0004s08650 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0004s08650 T278263_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.742 0.763
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.742 0.763
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.740 0.774
MYB83
M01073_2.00 		Arabidopsis thaliana
YACCHACC
GGTDGGTR		 PBM
Sullivan et al.(2014)
pTH7140 		0.689 0.677
MYB83
M07066_2.00 		Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR		 Dap-seq
OMalley et al.(2016)
MYB83_col_a 		0.689 0.677
MYB83
M07067_2.00 		Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN		 Dap-seq
OMalley et al.(2016)
MYB83_colamp_a 		0.689 0.677
MYB111
M00882_2.00 		Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN		 PBM
Franco-Zorrilla et al.(2014)
MYB111 		0.679 0.731
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.674 0.710
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.674 0.710
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.674 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s08650.1 Myb 13 60
POPTR_0004s08650.1 Myb 66 111

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

783 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HELT Anolis carolinensis ENSACAG00000002389 N
ENSAMXG00000000740 Astyanax mexicanus ENSAMXG00000000740 N
ENSBTAP00000019570-D1 Bos grunniens ENSBTAP00000019570-D1 N
HELT Bos taurus ENSBTAG00000014704 N
HELT Callithrix jacchus ENSCJAG00000005863 N
Aan_R004205 Calypte anna Aan_R004205 N
HELT Canis familiaris ENSCAFG00000007599 N
ENSCPOG00000024816 Cavia porcellus ENSCPOG00000024816 N
Cmyd_10002198 Chelonia mydas Cmyd_10002198 N
helt Danio rerio ENSDARG00000056400 N
HELT Dasypus novemcinctus ENSDNOG00000011225 N
HELT Equus caballus ENSECAG00000008629 N
HELT Felis catus ENSFCAG00000025140 N
ENSFALG00000011825 Ficedula albicollis ENSFALG00000011825 N
ENSGMOG00000012454 Gadus morhua ENSGMOG00000012454 N
helt Gasterosteus aculeatus ENSGACG00000017707 N
HELT Homo sapiens ENSG00000187821 N
ENSSTOG00000009054 Ictidomys tridecemlineatus ENSSTOG00000009054 N
ENSLACG00000001871 Latimeria chalumnae ENSLACG00000001871 N
ENSLOCG00000013768 Lepisosteus oculatus ENSLOCG00000013768 N
HELT Loxodonta africana ENSLAFG00000017721 N
HELT Monodelphis domestica ENSMODG00000004628 N
ENSMPUG00000011138 Mustela putorius furo ENSMPUG00000011138 N
Helt Mus musculus ENSMUSG00000047171 N
HELT Myotis lucifugus ENSMLUG00000004406 N
Ogr17354 Ophisaurus gracilis Ogr17354 N
ENSONIG00000017593 Oreochromis niloticus ENSONIG00000017593 N
helt Oryzias latipes ENSORLG00000019546 N
ENSOARG00000007647 Ovis aries ENSOARG00000007647 N
HELT Pan troglodytes ENSPTRG00000016645 N
ENSPFOG00000002530 Poecilia formosa ENSPFOG00000002530 N
Pvit_12333 Pogona vitticeps Pvit_12333 N
Helt Rattus norvegicus ENSRNOG00000010785 N
ENSSHAG00000004636 Sarcophilus harrisii ENSSHAG00000004636 N
HELT Taeniopygia guttata ENSTGUG00000006754 N
helt Takifugu rubripes ENSTRUG00000017593 N
helt Tetraodon nigroviridis ENSTNIG00000018055 N
XP_002934312 Xenopus tropicalis XP_002934312 N
ENSXMAG00000005631 Xiphophorus maculatus ENSXMAG00000005631 N