TCM_042704 (Theobroma cacao)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 TCM_042704 T280645_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.849 0.957
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.849 0.957
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.841 0.936
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.841 0.936
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.831 0.936
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY18036 Myb 591 641
EOY18038 Myb 591 636

Links

Other Myb/SANT family TFs
Other Theobroma cacao TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G49980 Brachypodium distachyon BRADI1G49980 N 0.000
Bra003405 Brassica rapa Bra003405 I 0.000
MLOC_15776 Hordeum vulgare MLOC_15776 N 0.000
LPERR06G01660 Leersia perrieri LPERR06G01660 N 0.000
OB06G11850 Oryza brachyantha OB06G11850 N 0.000
ORGLA06G0019100 Oryza glaberrima ORGLA06G0019100 N 0.000
OGLUM06G01860 Oryza glumaepatula OGLUM06G01860 N 0.000
BGIOSGA022010 Oryza indica BGIOSGA022010 N 0.000
OLONG_020703 Oryza longistaminata OLONG_020703 N 0.000
OMERI06G01780 Oryza meridionalis OMERI06G01780 N 0.000
ONIVA06G02210 Oryza nivara ONIVA06G02210 N 0.000
OPUNC06G01720 Oryza punctata OPUNC06G01720 N 0.000
ORUFI06G01870 Oryza rufipogon ORUFI06G01870 N 0.000
OS06G0130600 Oryza sativa OS06G0130600 N 0.000
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 0.000
Pavir.Db02349 Panicum virgatum Pavir.Db02349 N 0.000
Pavir.J00934 Panicum virgatum Pavir.J00934 N 0.000
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 0.000
Si006972m.g Setaria italica Si006972m.g N 0.000
Sb10g002020 Sorghum bicolor Sb10g002020 N 0.000
Traes_4AL_A02408BC8 Triticum aestivum Traes_4AL_A02408BC8 N 0.000
Traes_7DS_FE8BC1125 Triticum aestivum Traes_7DS_FE8BC1125 N 0.000
TRIUR3_11677 Triticum urartu TRIUR3_11677 N 0.000
GRMZM2G118690 Zea mays GRMZM2G118690 N 0.000