Cla011736 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla011736 T283221_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK21166.1
M01281_2.00 		Cannabis sativa
HACCWAMY
RKTWGGTD		 PBM
Lambert et al.(2019)
pTH11255 		0.819 0.903
MYB99
M07151_2.00 		Arabidopsis thaliana
NYYYACCWAMYHH
DDRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB99_col_a 		0.760 0.806
MYB99
M07152_2.00 		Arabidopsis thaliana
YHYACCTAMYH
DRKTAGGTRDR		 Dap-seq
OMalley et al.(2016)
MYB99_colamp_a 		0.760 0.806
MYB43
M07127_2.00 		Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB43_col_a 		0.758 0.849
MYB83
M01073_2.00 		Arabidopsis thaliana
YACCHACC
GGTDGGTR		 PBM
Sullivan et al.(2014)
pTH7140 		0.675 0.645
MYB83
M07066_2.00 		Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR		 Dap-seq
OMalley et al.(2016)
MYB83_col_a 		0.675 0.645
MYB83
M07067_2.00 		Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN		 Dap-seq
OMalley et al.(2016)
MYB83_colamp_a 		0.675 0.645
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla011736 Myb 14 61
Cla011736 Myb 67 112

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

323 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_600764.1 Arabidopsis lyrata scaffold_600764.1 I
fgenesh2_kg.8__2142__AT5G61590.1 Arabidopsis lyrata fgenesh2_kg.8__2142__AT5G61590.1 I
ERF107 Arabidopsis thaliana AT5G61590 I
ERF106 Arabidopsis thaliana AT5G07580 D
Bostr.26833s0076 Boechera stricta Bostr.26833s0076 I
Bostr.13129s0205 Boechera stricta Bostr.13129s0205 I
Bo9g175610 Brassica oleracea Bo9g175610 I
Bo9g014660 Brassica oleracea Bo9g014660 I
Bo7g098850 Brassica oleracea Bo7g098850 I
Bra009250 Brassica rapa Bra009250 I
Bra012939 Brassica rapa Bra012939 I
Bra028690 Brassica rapa Bra028690 I
Bra035919 Brassica rapa Bra035919 I
PK26398.1 Cannabis sativa PK26398.1 I
PK01935.1 Cannabis sativa PK01935.1 I
Cagra.2925s0026 Capsella grandiflora Cagra.2925s0026 I
Cagra.0542s0054 Capsella grandiflora Cagra.0542s0054 I
Carubv10001989m.g Capsella rubella Carubv10001989m.g I
Carubv10027835m.g Capsella rubella Carubv10027835m.g I
evm.TU.supercontig_13.253 Carica papaya evm.TU.supercontig_13.253 I
Cla003678 Citrullus lanatus Cla003678 I
Cla010887 Citrullus lanatus Cla010887 I
Ciclev10005863m.g Citrus clementina Ciclev10005863m.g I
orange1.1g030002m.g Citrus sinensis orange1.1g030002m.g I
Cucsa.094100 Cucumis sativus Cucsa.094100 I
Cucsa.129330 Cucumis sativus Cucsa.129330 I
Thhalv10005285m.g Eutrema salsugineum Thhalv10005285m.g I
Thhalv10014666m.g Eutrema salsugineum Thhalv10014666m.g I
gene21167-v1.0-hybrid Fragaria vesca gene21167-v1.0-hybrid I
GLYMA20G33800 Glycine max GLYMA20G33800 I
Gorai.001G051100 Gossypium raimondii Gorai.001G051100 I
Gorai.007G046100 Gossypium raimondii Gorai.007G046100 I
chr5.CM0909.360.nc Lotus japonicus chr5.CM0909.360.nc I
MDP0000517262 Malus domestica MDP0000517262 I
cassava44000.valid.m1 Manihot esculenta cassava44000.valid.m1 I
cassava21353.m1 Manihot esculenta cassava21353.m1 I
MTR_1g090290 Medicago truncatula MTR_1g090290 I
GSMUA_Achr1G00490_001 Musa acuminata GSMUA_Achr1G00490_001 I
POPTR_0003s15060 Populus trichocarpa POPTR_0003s15060 I
POPTR_0001s11800 Populus trichocarpa POPTR_0001s11800 I
Pm019544 Prunus mume Pm019544 I
PRUPE_ppa022802mg Prunus persica PRUPE_ppa022802mg I
30147.m014329 Ricinus communis 30147.m014329 I
SapurV1A.0059s0650 Salix purpurea SapurV1A.0059s0650 I
SapurV1A.1065s0040 Salix purpurea SapurV1A.1065s0040 I
Solyc05g052030.1 Solanum lycopersicum Solyc05g052030.1 I
PGSC0003DMG400036566 Solanum tuberosum PGSC0003DMG400036566 I
TCM_014850 Theobroma cacao TCM_014850 I