CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm002011
(
Prunus mume
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pm002011
T283445_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.845
0.903
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.845
0.903
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.803
0.849
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.803
0.849
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.794
0.839
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.794
0.839
MYB106
M11040_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.788
0.785
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.743
0.753
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC
GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.729
0.817
AtMYB74
M07104_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB74_colamp_a
0.699
0.785
AtMYB74
M07105_2.00
Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV
Dap-seq
OMalley et al.(2016)
MYB74_col
0.699
0.785
MYB39
M07106_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_col_a
0.688
0.774
MYB39
M07107_2.00
Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_colamp_a
0.688
0.774
ATY53
M07078_2.00
Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN
NNNNNNNNDDHGKTWGGTRVR
Dap-seq
OMalley et al.(2016)
MYB67_col_a
0.680
0.677
MYB55
M00876_2.00
Arabidopsis thaliana
ACCWAMCD
HGKTWGGT
PBM
Franco-Zorrilla et al.(2014)
MYB55
0.680
0.688
MYB55
M07102_2.00
Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND
Dap-seq
OMalley et al.(2016)
MYB55_colamp_a
0.680
0.688
MYB55
M07103_2.00
Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN
Dap-seq
OMalley et al.(2016)
MYB55_col
0.680
0.688
MYB58
M07005_2.00
Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN
Dap-seq
OMalley et al.(2016)
MYB58_col_a
0.669
0.710
MYB58
M07006_2.00
Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND
Dap-seq
OMalley et al.(2016)
MYB58_colamp_a
0.669
0.710
MYB49
M07140_2.00
Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD
Dap-seq
OMalley et al.(2016)
MYB49_col_a
0.669
0.774
MYB49
M07141_2.00
Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB49_colamp_a
0.669
0.774
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm002011
Myb
14
61
KGPWTPEEDQKLMKYIQKNGHGSWRALPKLAGLNRCGKSCRLRWTNYL
Pm002011
Myb
67
112
RGKFSQEEEQTILNLHSILGNKWSAIASHLPGRTDNEIKNFWNTHL
Links
Other
Myb/SANT
family TFs
Other
Prunus mume
TFs
953 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
M378DRAFT_42727
Amanita muscaria
M378DRAFT_42727
N
BOTBODRAFT_76690
Botryobasidium botryosum
BOTBODRAFT_76690
N
DACRYDRAFT_52998
Dacryopinax sp
DACRYDRAFT_52998
N
DICSQDRAFT_31039
Dichomitus squalens
DICSQDRAFT_31039
N
FOMPIDRAFT_1091714
Fomitopsis pinicola
FOMPIDRAFT_1091714
N
GYMLUDRAFT_107672
Gymnopus luxurians
GYMLUDRAFT_107672
N
M413DRAFT_71958
Hebeloma cylindrosporum
M413DRAFT_71958
N
HETIRDRAFT_248182
Heterobasidion irregulare
HETIRDRAFT_248182
N
HYDPIDRAFT_46608
Hydnomerulius pinastri
HYDPIDRAFT_46608
N
JAAARDRAFT_132180
Jaapia argillacea
JAAARDRAFT_132180
N
MPER_04209
Moniliophthora perniciosa
MPER_04209
N
PHACADRAFT_172347
Phanerochaete carnosa
PHACADRAFT_172347
N
PILCRDRAFT_57008
Piloderma croceum
PILCRDRAFT_57008
N
PILCRDRAFT_82466
Piloderma croceum
PILCRDRAFT_82466
N
PISMIDRAFT_80466
Pisolithus microcarpus
PISMIDRAFT_80466
N
M404DRAFT_88423
Pisolithus tinctorius
M404DRAFT_88423
N
PLEOSDRAFT_1026938
Pleurotus ostreatus
PLEOSDRAFT_1026938
N
SERLA73DRAFT_50420
Serpula lacrymans
SERLA73DRAFT_50420
N
M422DRAFT_119565
Sphaerobolus stellatus
M422DRAFT_119565
N
CY34DRAFT_51775
Suillus luteus
CY34DRAFT_51775
N