CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

29677.m000183 *(Ricinus communis)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	29677.m000183	T283763_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK08316.1 M02350_2.00	Cannabis sativa	NNNRWATCNN	NNGATWYNNN	PBM Weirauch et al.(2014) pTH9488	0.836	0.826
RVE7 M01069_2.00	Arabidopsis thaliana	NDHRWATCNN	NNGATWYDHN	PBM Sullivan et al.(2014) pTH7081	0.792	0.826
RVE7 M02286_2.00	Arabidopsis thaliana	NDARTATCH	DGATAYTHN	PBM Weirauch et al.(2014) pTH7277	0.792	0.826
RVE7L M07071_2.00	Arabidopsis thaliana	NNNNWAAATATCWNN	NNWGATATTTWNNNN	Dap-seq OMalley et al.(2016) AT3G10113_col_a	0.792	0.826
RVE7 M07008_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) EPR1_colamp_a	0.792	0.826
RVE7 M07009_2.00	Arabidopsis thaliana	NWAAATATCTHN	NDAGATATTTWN	Dap-seq OMalley et al.(2016) EPR1_col	0.792	0.826
RVE1 M00879_2.00	Arabidopsis thaliana	AAATATCT	AGATATTT	PBM Franco-Zorrilla et al.(2014) RVE1	0.745	0.739
RVE1 M07128_2.00	Arabidopsis thaliana	NNNWAAATATCTNN	NNAGATATTTWNNN	Dap-seq OMalley et al.(2016) RVE1_col_a	0.745	0.739
RVE1 M07129_2.00	Arabidopsis thaliana	NNWAATATCW	WGATATTWNN	Dap-seq OMalley et al.(2016) RVE1_colamp_a	0.745	0.739
LHY M06997_2.00	Arabidopsis thaliana	NWAAATATCT	AGATATTTWN	Dap-seq OMalley et al.(2016) LHY1_col_a	0.744	0.739
LHY M06998_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LHY1_colamp_a	0.744	0.739
OS08G0157600 M02330_2.00	Oryza sativa	DNRTATCHN	NDGATAYNH	PBM Weirauch et al.(2014) pTH7793	0.734	0.739
RVE6 M01081_2.00	Arabidopsis thaliana	AATATCTD	HAGATATT	PBM Sullivan et al.(2014) pTH7151	0.705	0.674
RVE6 M07138_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At5g52660_col_a	0.705	0.674
RVE6 M07139_2.00	Arabidopsis thaliana	NNNWAAATATCT	AGATATTTWNNN	Dap-seq OMalley et al.(2016) At5g52660_colamp_a	0.705	0.674
RVE5 M01079_2.00	Arabidopsis thaliana	NWAATATCHN	NDGATATTWN	PBM Sullivan et al.(2014) pTH7138	0.702	0.652
RVE5 M07100_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At4g01280_col_a	0.702	0.652
RVE5 M07101_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At4g01280_colamp_a	0.702	0.652
RVE8 M01074_2.00	Arabidopsis thaliana	NNNRWATCNN	NNGATWYNNN	PBM Sullivan et al.(2014) pTH7136	0.695	0.674
RVE8 M07069_2.00	Arabidopsis thaliana	NHNWAAATATCT	AGATATTTWNDN	Dap-seq OMalley et al.(2016) At3g09600_col_a	0.695	0.674
RVE8 M07070_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At3g09600_colamp_a	0.695	0.674
PK02532.1 M02347_2.00	Cannabis sativa	WAATATCTN	NAGATATTW	PBM Weirauch et al.(2014) pTH9579	0.695	0.652
RVE4 M07117_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LCL1_colamp_a	0.695	0.652
RVE4 M07118_2.00	Arabidopsis thaliana	NAAAATATCT	AGATATTTTN	Dap-seq OMalley et al.(2016) LCL1_col	0.695	0.652
CCA1 M00875_2.00	Arabidopsis thaliana	NDNRWATCN	NGATWYNHN	PBM Franco-Zorrilla et al.(2014) CCA1	0.689	0.717
CCA1 M11039_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CCA1_Q5	0.689	0.717
mybG M02319_2.00	Dictyostelium discoideum	WAATATCT	AGATATTW	PBM Weirauch et al.(2014) pTH5362	0.661	0.652
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
29677.m000183	Myb	16	61	REKWTEEEHYKFLEALKLYGRGWRKIQGFIGTKSAVQIRSHAQKFF

Links
Other Myb/SANT family TFs
Other *Ricinus communis* TFs

472 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
COCC4DRAFT_203966	Bipolaris maydis	COCC4DRAFT_203966	N
COCMIDRAFT_108257	Bipolaris oryzae	COCMIDRAFT_108257	N
COCSADRAFT_33801	Bipolaris sorokiniana	COCSADRAFT_33801	N
COCVIDRAFT_110225	Bipolaris victoriae	COCVIDRAFT_110225	N
COCCADRAFT_103070	Bipolaris zeicola	COCCADRAFT_103070	N
PVAR5_4503	Byssochlamys spectabilis	PVAR5_4503	N
estExt_Genewise1Plus.C_260021	Cochliobolus heterostrophus C5	estExt_Genewise1Plus.C_260021	N
CFIO01_00876	Colletotrichum fioriniae	CFIO01_00876	N
CGGC5_10948	Colletotrichum gloeosporioides	CGGC5_10948	N
CGGC5_5698	Colletotrichum gloeosporioides	CGGC5_5698	N
Cob_01455	Colletotrichum orbiculare	Cob_01455	N
FFUJ_09328	Fusarium fujikuroi	FFUJ_09328	N
FGRRES_03912	Fusarium graminearum	FGRRES_03912	N
FOXG_11743	Fusarium oxysporum	FOXG_11743	N
FPSE_05364	Fusarium pseudograminearum	FPSE_05364	N
FVEG_10069	Fusarium verticillioides	FVEG_10069	N
MGG_15021	Magnaporthe oryzae	MGG_15021	N
fgenesh1_pm.sca_33_chr6_1_0000053	Nectria haematococca	fgenesh1_pm.sca_33_chr6_1_0000053	N
OIDMADRAFT_104528	Oidiodendron maius	OIDMADRAFT_104528	N
PFICI_10851	Pestalotiopsis fici	PFICI_10851	N
V499_02546	Pseudogymnoascus pannorum	V499_02546	N
SAPIO_CDS7978	Scedosporium apiospermum	SAPIO_CDS7978	N
SETTUDRAFT_147291	Setosphaeria turcica	SETTUDRAFT_147291	N
VDAG_06371	Verticillium dahliae	VDAG_06371	N

29677.m000183 (Ricinus communis) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

472 Related TFs

29677.m000183 **(Ricinus communis)
Myb/SANT**