fgenesh1_pg.scaffold_198000070 (Physcomitrella patens)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 fgenesh1_pg.scaffold_198000070 T284897_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.909 0.957
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.901 0.935
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.901 0.935
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.901 0.935
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.901 0.935
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.901 0.935
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.899 0.935
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.899 0.935
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.899 0.935
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.848
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.803 0.891
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.803 0.891
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.803 0.891
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.674
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.630
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.630
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.630
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_198000070 Myb 24 69

Links

Other Myb/SANT family TFs
Other Physcomitrella patens TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_67224 Agaricus bisporus AGABI2DRAFT_67224 N 0.000
M378DRAFT_72501 Amanita muscaria M378DRAFT_72501 N 0.000
BOTBODRAFT_56781 Botryobasidium botryosum BOTBODRAFT_56781 N 0.000
L804_03480 Cryptococcus gattii L804_03480 N 0.000
CNG03860 Cryptococcus neoformans CNG03860 N 0.000
FIBRA_08135 Fibroporia radiculosa FIBRA_08135 N 0.000
GALMADRAFT_236024 Galerina marginata GALMADRAFT_236024 N 0.000
M413DRAFT_441197 Hebeloma cylindrosporum M413DRAFT_441197 N 0.000
M413DRAFT_328416 Hebeloma cylindrosporum M413DRAFT_328416 N 0.000
K443DRAFT_88544 Laccaria amethystina K443DRAFT_88544 N 0.000
LACBIDRAFT_311840 Laccaria bicolor LACBIDRAFT_311840 N 0.000
Moror_7396 Moniliophthora roreri Moror_7396 N 0.000
PAXRUDRAFT_826859 Paxillus rubicundulus PAXRUDRAFT_826859 N 0.000
PHACADRAFT_261296 Phanerochaete carnosa PHACADRAFT_261296 N 0.000
fgenesh1_pg.C_scaffold_9000152 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_9000152 N 0.000
PILCRDRAFT_811342 Piloderma croceum PILCRDRAFT_811342 N 0.000
PISMIDRAFT_639669 Pisolithus microcarpus PISMIDRAFT_639669 N 0.000
M404DRAFT_19687 Pisolithus tinctorius M404DRAFT_19687 N 0.000
PLEOSDRAFT_1039663 Pleurotus ostreatus PLEOSDRAFT_1039663 N 0.000
POSPLDRAFT_104357 Postia placenta POSPLDRAFT_104357 N 0.000
SCLCIDRAFT_1210097 Scleroderma citrinum SCLCIDRAFT_1210097 N 0.000
SERLA73DRAFT_104045 Serpula lacrymans SERLA73DRAFT_104045 N 0.000
CY34DRAFT_797726 Suillus luteus CY34DRAFT_797726 N 0.000
WALSEDRAFT_58878 Wallemia sebi WALSEDRAFT_58878 N 0.000