CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_007_00580
(
Aquilegia coerulea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Aquca_007_00580
T285522_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN
NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.737
0.774
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.698
0.710
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN
NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.688
0.720
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.662
0.763
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.662
0.763
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.662
0.763
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_007_00580.1
Myb
29
75
KGPWSAEEDQTLTRLVDIHGARNWTLISRYIPGRSGKSCRLRWCNQL
Aquca_007_00580.1
Myb
81
126
HRPFSQAEDEAILAAHQNYGNRWATIAKLLPGRTDNAVKNHWNSTL
Links
Other
Myb/SANT
family TFs
Other
Aquilegia coerulea
TFs
192 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy